interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE SV40 LARGE T-ANTIGEN ORIGIN BINING DOMAIN BOUND TO SITE I DNA
(Large T antigen)
referenceBullock et al. J.Virol. 87 2923 2013
sourceSimian virus 40
experimentX-ray (resolution=3.20, R-factor=0.191)
structural superfamilyOrigin of replication-binding domain, RBD-like;
sequence familyOrigin of replication binding protein;
multimeric complexes2itl_AB 2ntc_AB 4fgn_AB 5d9i_AB
reference complex2itl_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSNRTRR

Estimated binding specificities ?

readout + contactlogo
# IC=6.610 IC/col=0.944 n_of_columns=7 specificity:   
A |  11   0  67   9   0   0   0
C |   9   0   9  11   0  96  87
G |  67  96  11  76  96   0   9
T |   9   0   9   0   0   0   0
scan!

home
updated Mon Dec 16 23:18:06 2024