| structure name | THE COMPLEX CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM THE ONCOGENIC KSHV WITH DNA (K9) |
| reference | Venkatachalam et al. 'Nucleic 41 4295 2013 |
| source | HUMAN HERPESVIRUS 8 |
| experiment | X-ray (resolution=1.48, R-factor=0.198) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatHTLT----RGNT--RGSTATRA-- L +-----------------------------2o6g_G +-1 ----ECKT--RGAT--RGNT---- L +-2 +-----------------------------1pue_E ! ! ----DCKT--RG----RGYA--KA L +-3 +-----------------------------5jvt_A ! ! ----QCKT--RGAT--RGNT---- L --4 +-----------------------------8smh_F ! ----DCKT--RGST--RGYA---- L +-----------------------------4bnc_A |
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updated Mon Jun 29 18:04:26 2026