| structure name | CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT (ECU04_1440 PROTEIN) |
| reference | Hopfner et al. Elife 4 ? 2015 |
| source | ENCEPHALITOZOON CUNICULI (STRAIN GB-M1) / ENCEPHALITOZOON CUNICULI (STRAIN GB-M1) |
| experiment | X-ray (resolution=3.78, R-factor=0.236) |
| structural superfamily | TATA-box binding protein-like; |
| sequence family | Transcription factor TFIID or TATAbinding; |
| multimeric complexes | 4wzs_ABD |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NVFLFVTNVFPLFVT |
Estimated binding specificities ?
| contact |  |
A | 7 0 9 0 0 73 0 96 7 C | 75 0 7 0 0 7 0 0 9 G | 7 0 7 0 0 7 0 0 73 T | 7 96 73 96 96 9 96 0 7scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: TBP | ||
| TATAAAAG | PubMed | 4wzs_D(1.10e-13), 4wzs_ABD(1.10e-13) |
| TATAAA | PubMed | 4wzs_D(1.18e-08), 4wzs_ABD(1.19e-08) |
| TGTAAA | PubMed | 4wzs_D(3.29e-04), 4wzs_ABD(3.30e-04) |
| GGGTATAAAAGG | PubMed | 4wzs_D(3.35e-10), 4wzs_ABD(3.37e-10) |
| AATAAAAG | PubMed | 4wzs_D(2.06e-09), 4wzs_ABD(2.06e-09) |
| CATAAA | PubMed | 4wzs_D(3.90e-05), 4wzs_ABD(3.91e-05) |
| CTTTT | PubMed | 4wzs_D(3.62e-06), 4wzs_ABD(3.63e-06) |
| TAAAAA | PubMed | 4wzs_D(3.90e-05), 4wzs_ABD(3.91e-05) |
| TATATA | PubMed | 4wzs_D(3.29e-04), 4wzs_ABD(3.30e-04) |
| TATAA | PubMed | 4wzs_D(3.62e-06), 4wzs_ABD(3.62e-06) |
| TATTTAAA | PubMed | 4wzs_D(6.56e-03), 4wzs_ABD(6.57e-03) |
| TATATAA | PubMed | 4wzs_D(6.01e-06), 4wzs_ABD(6.03e-06) |
| site | source | matches (E-value) |
Dendrogram of similar interfaces ?
matrix formatNTVTFTLTFAVATT--NAVTFAPALTFTVATA L +-----------------------------7nvu_O --3 NTVAFALAFT--TCQANTVAFAPALAFTVTTT L ! +-----------------6cnb_R +-----------2 NTVAFCLTFAVATT--NAVTFTPALTFTVATA L ! +4wzs_D +-----------------1 NTVTFALAFTVATT--NAVTFTPALTFAVTTA +4roc_B |
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updated Fri Sep 13 18:56:09 2024