| structure name | RNA POLYMERASE II CORE PRE-INITIATION COMPLEX WITH OPEN PROMOTER DNA (TATA-BOX-BINDING PROTEIN) |
| source | HOMO SAPIENS |
| experiment | NMR |
| structural superfamily | TATA-box binding protein-like; |
| sequence family | Transcription factor TFIID or TATAbinding; |
| multimeric complexes | 5iy6_AMPTV 5iy7_ABEMNPTV 5iy8_ABEMNPTV 5iy9_ABEMNPTV 5iya_AMPT 5iyb_ABEMNPT 5iyc_ABEMNPT 5iyd_ABEMNPT 6mzm_ABTW 6o9l_7AMNPT 6o9l_ES 7lbm_AMOPTW 7lbm_BEQ 7nvr_7AEMORU 7nvs_AMORU 7nvs_BE 7nvt_AMORU 7nvu_ABEMORU 7nvy_7AMORU 7nvy_BE 7nvz_7AMORU 7nw0_7ABEMORU 7zwd_AMORUbc 7zwd_BE 7zx7_AMORUbc 7zx7_BE 8gxq_ABCDEFGHPQs 8gxs_ABCDEFGHPQ 8iue_34BEPUVW 8iuh_1I 8iuh_OQ |
| redundant complexes | 6o9l 6mzm 7nvr 5iy6 7nvs 5iy8 7nvt 5iy9 5iya 5iyb 5iyc 5iyd 7nvy 7nvz 7nw0 7egd 7egj 5iy7 5fur 7edx 7eg7 7eg8 7eg9 7ega |
| reference complex | 5iy6_P |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NVFLFVTNVFPLFVT |
Estimated binding specificities ?
| contact |  |
A | 0 96 13 96 96 54 96 0 C | 0 0 16 0 0 13 0 0 G | 0 0 13 0 0 13 0 96 T | 96 0 54 0 0 16 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatNTVTFT--LTFAVATT--NAVTFAPALTFTVATA-- L +7nvu_O +--------1 NTVAFA--LAFT--TCQANTVAFAPALAFTVTTT-- L ! +6cnb_R +---4 NTVTFT--LTFAVATT--NAVTFTPALTFAVATA-- L ! ! +1qna_B ! +-------3 NTVAFC--LTFAVATT--NAVTFTPALTFTVATA-- L +-------------5 ! +4wzs_D ! ! +-2 NTVTFA--LAFTVATT--NAVTFTPALTFAVTTA-- L ! ! +4roc_B --6 ! NAVAFTPALTFAVATA----VAFTPALTFAVAST-- L ! +------------1ais_A ! ----------------------------------RT +--------------------------6mup_M |
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updated Mon Dec 18 21:19:43 2023