5ld2_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RECBCD+DNA COMPLEX REVEALING ACTIVATED NUCLEASE DOMAIN (RECBCD ENZYME SUBUNIT RECB,RECBCD ENZYME SUBUNIT RECB,...)
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
sequence family	UvrD/REP helicase;
multimeric complexes	5ld2_BCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ld2_B interface=245,248,250,404,405,541,542,566,743, aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtfteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdeaavftihgfcqrmlnlnafesgmlfeqqliedesllryqacadfwrrhcyplpreiaqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeldalieSsgIdRrkfnrsnqakwidkisawaeeetnsyqlpeslekftprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgfddmlsrldsalrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyaFRgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlvRSrqeaaqvrdaltlleipsvylsnRdsvfetleaqemlwllqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqivtihkskgleyplvwlpfitnfRvqeqafyhdrhsfeavldlnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrrgdkkgdtdvhqsalgrllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsysglqqrxxxxxxxxxxxxxxxxxxxxptltphqfprgaspgtflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?

matrix format

  
  FTTTHT--FTDT----YT--WTRTRTKT------------------   L           +-----------------------------2pjr_A    
                                                             +-2 
  ------PT----DTVT--PT----FT--HT----------------   L         ! !               +-------------3upu_A    
                                                           +-3 +---------------1 
  ------------------VT--------HT----------------   L       ! !                 +-------------7otj_B    
                                                         +-4 ! 
  --------------------------------RT--IAQTNA----   L     ! ! +-----------------------------8eml_B    
                                                       +-5 ! 
  ------------------------------RA--KCITQTNA----   L   ! ! +-----------------------------7q3o_C    
                                                     --6 ! 
  --------------------------------RT--TAQCNATT--   L   ! +-----------------------------8pmf_A    
                                                       ! 
  --------------------------------RT--VTQTNA--RG   L   +-----------------------------8ejp_B

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updated Mon Jun 29 20:22:42 2026