8eml_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF GSX2 HOMEODOMAIN IN COMPLEX WITH DNA (GS homeobox 2)
reference	Kovall et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=2.21, R-factor=0.225)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8eml_B interface=3,45,48,49, rmRtaftstqllelerefssnmylsrlrrieiatylnlsekqvkIwfQNrrvkhkke
interface signature	RIQN

Estimated binding specificities ?

readout + contact

# IC=5.971 IC/col=0.853 n_of_columns=7

specificity:

A |   0  48  24   0   0  96  64
C |   0  16  24   0   0   0  16
G |   0  16  24   0   0   0  16
T |  96  16  24  96  96   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RTQTVAQTNA------   L                              +8osb_E    
                                                  +-1 
  RT--VTKGNA--KA--   L                  +---------2 +2lkx_A    
                                        !         ! 
  RT--IAQCNAMG----   L             +----3         +-1b72_A    
                                   !    ! 
  ----NCICNARGRG--   L     +-------4    +-----------4xrm_B    
                           !       ! 
  RC--IAQCNAYC----   L   +-5       +----------------3rkq_B    
                         ! ! 
  ----VTCCNAQA--RT   L --6 +------------------------8g87_X    
                         ! 
  ----------YCFAKC       +-------------------------6pe2_B

home
updated Sat Sep 14 09:53:18 2024