| structure name | STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA (Homeobox protein CDX-1) |
| reference | Morgunova et al. 'To ? ? ? |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.78, R-factor=0.220) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes |  5lux_K
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YRKIQN |
Estimated binding specificities ?
| contact |  |
A | 15 10 5 55 0 96 96 96 C | 50 5 5 16 0 0 0 0 G | 16 71 5 15 0 0 0 0 T | 15 10 81 10 96 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatRARA----IAQTNA------ L +-5ego_B +-----------------------2 --RT----NT--NAIARG-- L ! +-1b72_B ! --RT--QTVAQTNA------ L ! +8osb_E ! +---1 --RT----VTKGNA--KA-- L +-7 +--------3 +2lkx_A ! ! ! ! ----RT--NT--NAIARG-- L ! ! +------5 +---4cyc_B ! ! ! ! --RT----IAQCNAMG---- L ! ! ! ! +----1b72_A +-8 +-----6 +-------4 --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! ! ! --------NCICRG------ L --9 ! +-------------------4xrm_B ! ! --------VTCCNAQA--RT L ! +---------------------------8g87_X ! --------------YCFAKC L +---------------------------6pe2_B |
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updated Sat Jan 10 17:13:09 2026