| structure name | STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA (Homeobox protein CDX-1) |
| reference | Morgunova et al. 'To ? ? ? |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.78, R-factor=0.220) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes |  5lux_K
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YRKIQN |
Estimated binding specificities ?
| contact |  |
A | 15 5 5 60 0 96 96 96 C | 51 15 6 15 0 0 0 0 G | 15 66 5 15 0 0 0 0 T | 15 10 80 6 96 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatRARA------------------------IAQTNAMC-- L +-----------------------------1puf_A +-1 --RA------------------------ITQTNAMG-- L +-2 +-----------------------------5zjt_E ! ! --------------------YTVC--KGDCKC------ L +-3 +-----------------------------2qhb_A ! ! ----------------------------ITKGNARGRA L +-4 +-----------------------------1zq3_P ! ! --RT------------------------NT--NAIARG L +-5 +-----------------------------1b72_B ! ! --RA------------------------ITQCNAMC-- L +-6 +-----------------------------1b8i_A ! ! ----HTRA--------------------NCATATAT-- L +-7 +-----------------------------1le8_B ! ! ----RT----------------------NT--NAIARG L +-8 +-----------------------------4cyc_B ! ! ----NGRGTG--------LG--LC-------------- +-9 +-----------------------------6vjw_A ! ! ----NGRGTG--------LG--LCRG------------ -10 +-----------------------------4e9f_A ! ----------LAHAKARA-------------------- +-----------------------------6dta_A |
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updated Tue Dec 19 20:27:18 2023