| structure name | STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH A CIRCULAR INTERMEDIATE DNA (CI6B-DNA) (Int protein) |
| reference | Rubio-Cosials et al. Cell 173 208 2018 |
| source | Enterococcus faecalis |
| experiment | X-ray (resolution=2.67, R-factor=0.188) |
| structural superfamily | DNA breaking-rejoining enzymes; |
| sequence family | Phage integrase family; |
| multimeric complexes | 6emz_AB 6en0_AB 6en1_AB 6en2_AB |
| redundant complexes | 6emz 6en1 6en0 |
| reference complex | 6en1_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NTRKTNRSKYTAVDR |
Estimated binding specificities ?
| contact |  |
A | 6 0 96 96 96 96 6 4 4 24 65 24 4 C | 4 0 0 0 0 0 4 4 8 24 8 24 4 G | 82 96 0 0 0 0 4 6 10 24 10 24 82 T | 4 0 0 0 0 0 82 82 74 24 13 24 6scan! |
Dendrogram of similar interfaces ?
matrix formatNATA------RT----KTTT----NA--RCSAKG--YG--------TA------ATVTDT----------RC---------- L +----------6en2_A +-1 KGTA--NAYASG----ATST----LT------------------------RCST----TTSTRGYC----------TT--QT L +-------2 +----------1z19_B ! ! ----------------AATA--KGNA--IT----------------------TTQAATYGYAKT--------------TT-- L +-3 +-----------5jk0_B ! ! HTTTKGMT--ST----------KATT--QT----QT------------RT--------STRG----EA-------------- L +----4 +-------------------1xo0_B ! ! ------------------------------------------------------IT--------RT------RT-------- L --5 +-------------------4e0p_A ! KATT--AAYT--WTTTKATTQTSTLTLTNT--ST----LTLTRTST----------------------QA----DCKCTC-- L +------------------------2a3v_C |
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updated Tue Dec 17 03:53:47 2024