8b1t_B : 3D-footprint complex

Interface of input file ?

structure name	RECBCD-DNA IN COMPLEX WITH THE PHAGE PROTEIN ABC2
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
sequence family	UvrD/REP helicase;
multimeric complexes	1w36_BC 1w36_EF 3k70_BCD 3k70_EFG 5ld2_BCD 6sjb_BCD 6sje_BCD 6sjf_BCD 6sjg_BCD 6t2u_BCD 6t2v_BCD 7mr3_BC 7mr4_BC 8b1t_BCD 8b1u_BCD
reference complex	6sjf_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b1t_B interface=251,418,419,555,556,738,757,820, aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtfteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdeaavftihgfcqrmlnlnafesgmlfeqqliedesllryqacadfwrrhcyplpreiaqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeldaliessgidrRkfnrsnqakwidkisawaeeetnsyqlpeslekfsqrfledrtkaggetprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgfddmlsrldsalrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyaFRgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlvRSrqeaaqvrdaltlleipsvylsnrdsvfetleaqemlwllqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqivtiHkskgleyplvwlpfitnfRvqeqafyhdrhsfeavldlnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrRgdkkgdtdvhqsalgrllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsysglqqtphqfprgaspgtflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag
interface signature	RFRRSHRR

Estimated binding specificities ?

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# IC=8.004 IC/col=0.222 n_of_columns=36

specificity:

A |  96  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24  24  24  24  24   9  69  24  24   0   0   0
C |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24  24  24  24  24   9   9  24  24   0   0   0
G |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  67  24  24  24  24  24  24  24  11   9  24  24   0   0   0
T |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11  24  24  24  24  24  24  24  67   9  24  24  96  96  96

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updated Fri Sep 13 09:54:05 2024