1llm_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA (CHIMERA OF ZIF23-GCN4)
reference	Wolfe et al.
source	MUS MUSCULUS, SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=1.50, R-factor=?)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
multimeric complexes	1llm_CD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1llm_D interface=15,17,18,21,43,45,46,49, mkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhrdiqhilpiledkveellsknyhlenevarlkklv
interface signature	RDHTRDER

Estimated binding specificities ?

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# IC=5.974 IC/col=0.853 n_of_columns=7

specificity:

A |   7   5   0   1  10   2   8
C |   8  87   0   1   1   2   8
G |  73   1  96  36  83  90  74
T |   8   3   0  58   2   2   6

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: GCN4
CACGTG	PubMed	1llm_D(7.45e-03), 1llm_CD(1.13e-03)
TTGCGTGA	PubMed	1llm_D(7.34e-04), 1llm_CD(6.36e-03)

Dendrogram of similar interfaces ?

matrix format

  
  RGST--YGYC----QC--TGST--RGYT           +-----------------------------4is1_C    
                                       +-4 
  --RG--DAQARG--RGSTDCHG----TT   L     ! +-----------------------------6b0o_A    
                                       ! 
  --EC--SCKGRG--LT--FCNA------   L   +-5                        +----1ubd_C    
                                     ! !                  +-----2 
  ----TCYCKARG--QA----TC------       ! !                  !     +----5yeg_A    
                                     ! +------------------3 
  --QA--TCNA----QAHTTT------QA   L --6                    !         +1g2d_F    
                                     !                    +---------1 
  --RGSTDAHARG--RGSTDCHG----TT   L   !                              +5kl3_A    
                                     ! 
  ----------NCAT------STRA----       +-----------------------------1a02_J

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updated Sat Jan 10 04:46:41 2026