structure name | CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA (CHIMERA OF ZIF23-GCN4) |
reference | Wolfe et al. |
source | MUS MUSCULUS, SACCHAROMYCES CEREVISIAE |
experiment | X-ray (resolution=1.50, R-factor=?) |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
multimeric complexes | 1llm_CD |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RDHTRDER |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 76 0 0 0 19 C | 96 96 96 20 96 0 96 20 G | 0 0 0 0 0 96 0 38 T | 0 0 0 0 0 0 0 19scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: GCN4 | ||
CACGTG | PubMed | 1llm_D(7.45e-03), 1llm_CD(1.13e-03) |
TTGCGTGA | PubMed | 1llm_D(7.34e-04), 1llm_CD(6.36e-03) |
Dendrogram of similar interfaces ?
matrix formatRGST--YGYC----QC--TGST--RGYT +-----------------------------4is1_C +-4 --RG--DAQARG--RGSTDCHG----TT L ! +-----------------------------6b0o_A ! --EC--SCKGRG--LT--FCNA------ L +-5 +----1ubd_C ! ! +-----2 ----TCYCKARG--QA----TC------ ! ! ! +----5yeg_A ! +------------------3 --QA--TCNA----QAHTTT------QA L --6 ! +1g2d_F ! +---------1 --RGSTDAHARG--RGSTDCHG----TT L ! +5kl3_A ! ----------NCAT------STRA---- +-----------------------------1a02_J |
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updated Fri Sep 13 15:47:57 2024