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structure nameSTRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA
(AP-1 FRAGMENT JUN)
referenceGlover et al. Nature 392 42 1998
sourceHOMO SAPIENS
experimentX-ray (resolution=2.70, R-factor=0.246)
structural superfamilyLeucine zipper domain;A DNA-binding domain in eukaryotic transcription factors;
sequence familybZIP transcription factor; Basic region leucine zipper;
multimeric complexes1a02_FJN 1fos_EF 1fos_GH 1jnm_AB 1s9k_CDE 2h7h_AB 5t01_AB
redundant complexes1s9k
reference complex5t01_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ------------NT----ATAT--STRG--   L                                     +1dh3_C    
                                                                       +-1 
  --RA--NA----AAVT----STRG------   L                        +----------4 +1h89_A    
                                                            !          ! 
  RG----NC----YGAT------RC------   L                        !          +4eot_A    
                                                            !  
  ----------NC----AAAT----RT----   L                     +-10          +1a02_F    
                                                         !  !      +---2 
  --RA--NT----AAVT----STRG------   L                     !  ! +----8   +1hjb_A    
                                                         !  ! !    ! 
  FTRC--------------------------   L             +------11  +-9    +---7aw7_D    
                                                 !       !    ! 
  --------------NCTT----AT----RG   L             !       !    +--------2dgc_A    
                                                 !       !  
  --RA--NA----AAVT----STRG------   L             !       !          +1nwq_C    
                                              +-13       +----------5 
  ------NCRT--ATAT----STRG------              !  !                  +1t2k_D    
                                              !  !  
  NARTAGQT----FTRG--------------   L          !  !                   +1gd2_G    
                                              !  !                 +-3 
  RG----NC----YGAT----CTRG------   L          !  +-----------------7 +2wt7_B    
                                       +-----14                    ! 
  ------NT----ATAT------RG------   L   !      !                    +5t01_B    
                                       !      !  
  ------NC----AT------STRA------       !      !                   +1a02_J    
                                     -15      !    +--------------6 
  RC----NC----AAAT----CTRC------   L   !      +---12              +2wt7_A    
                                       !           !  
  RG----NT----ATAT------RG------   L   !           +--------------5vpe_C    
                                       !  
  ------NTRT--ATAT----CTRA------   L   +--------------------------5vpe_D    
                                     

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updated Thu Sep 12 14:30:41 2024