| structure name | CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX (CCAATenhancer binding protein alpha) |
| reference | Sebastian et al. J.Biol.Chem. 278 15178 2003 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.80, R-factor=0.221) |
| structural superfamily | Leucine zipper domain; |
| sequence family | Basic region leucine zipper; |
| multimeric complexes | 1nwq_AC |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNAVSR |
Estimated binding specificities ?
| readout + contact |  |
A | 7 3 4 5 C | 6 10 5 80 G | 6 0 77 7 T | 77 83 10 4scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: EBPALPHA | ||
| CGCAA | PubMed | 1nwq_C(1.41e-04), 1nwq_AC(1.71e-06) |
Dendrogram of similar interfaces ?
matrix format------RA----NT--AAVT----STRG---- L +-1hjb_A +-------------3 ------NCRT--ATAT--STRG---------- +---5 +-1t2k_D ! ! RGNC----YGAT----RC-------------- L ! +---------------4eot_A ! ----------------NT----ATAT--STRG L +--6 +1dh3_C ! ! +---------2 ------------NC--AT------STRA---- ! ! ! ! +1a02_J ! +--------4 +-1 --------FTRC-------------------- L --7 ! +7aw7_D ! ! ------------NCTT--AT------RG---- L ! +----------2dgc_A ! ----RG------NC--YGAT----CTRG---- L +----------------------2wt7_B |
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updated Tue Dec 19 05:58:28 2023