| structure name | CRYSTAL STRUCTURE OF THE MAFA HOMODIMER BOUND TO THE CONSENSUS MARE (Transcription factor MafA) |
| reference | Guanga et al. Biochemistry 51 9706 2012 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.85, R-factor=0.223) |
| structural superfamily | A DNA-binding domain in eukaryotic transcription factors;Leucine zipper domain; |
| sequence family | bZIP Maf transcription factor; |
| multimeric complexes | 4eot_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNYAR |
Estimated binding specificities ?
readout + contact |  |
A | 0 0 0 14 16 59 0 0 C | 0 0 96 14 14 14 0 0 G | 0 96 0 9 59 9 96 0 T | 96 0 0 59 7 14 0 96scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MAFA | ||
| TGACTCA | PubMed | 4eot_A(4.68e-04) |
Dendrogram of similar interfaces ?
matrix format------------RG----NC----YGAT--RC-- L +4eot_A +------2 ------------RG----NC----YGATCTRG-- L +-------3 +2wt7_B ! ! QG------QC----FTRC---------------- L +-4 +-------7aw7_D ! ! --RA--NA----AAVT--STRG------------ L +------5 +---------------1h89_A ! ! --RG--QGNART--AGQT--FTRG---------- L ! ! +1gd2_G +--6 +---------------1 ----RA--NT----AAVT--STRG---------- L ! ! +1hjb_A --7 ! --------------------------NCAAATRT L ! +-----------------------1a02_F ! ----RA--NT----ATVT--STRG---------- +--------------------------6mg1_B |
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updated Wed Dec 18 00:25:09 2024