structure name | CRYSTAL STRUCTURE OF THE MAFA HOMODIMER BOUND TO THE CONSENSUS MARE (Transcription factor MafA) |
reference | Guanga et al. Biochemistry 51 9706 2012 |
source | Homo sapiens |
experiment | X-ray (resolution=2.85, R-factor=0.223) |
structural superfamily | A DNA-binding domain in eukaryotic transcription factors;Leucine zipper domain; |
sequence family | bZIP Maf transcription factor; |
multimeric complexes | 4eot_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RNYAR |
Estimated binding specificities ?
readout + contact |
A | 96 0 11 20 67 0 0 96 C | 0 96 9 48 10 0 96 0 G | 0 0 9 19 19 96 0 0 T | 0 0 67 9 0 0 0 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: MAFA | ||
TGACTCA | PubMed | 4eot_A(4.68e-04) |
Dendrogram of similar interfaces ?
matrix format------------RG----NC----YGAT--RC-- L +4eot_A +------2 ------------RG----NC----YGATCTRG-- L +-------3 +2wt7_B ! ! QG------QC----FTRC---------------- L +-4 +-------7aw7_D ! ! --RA--NA----AAVT--STRG------------ L +------5 +---------------1h89_A ! ! --RG--QGNART--AGQT--FTRG---------- L ! ! +1gd2_G +--6 +---------------1 ----RA--NT----AAVT--STRG---------- L ! ! +1hjb_A --7 ! --------------------------NCAAATRT L ! +-----------------------1a02_F ! ----RA--NT----ATVT--STRG---------- +--------------------------6mg1_B |
home
updated Fri Sep 13 18:09:41 2024