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legend  pdf

structure nameCRYSTAL STRUCTURE OF THE MAFA HOMODIMER BOUND TO THE CONSENSUS MARE
(Transcription factor MafA)
referenceGuanga et al. Biochemistry 51 9706 2012
sourceHomo sapiens
experimentX-ray (resolution=2.85, R-factor=0.223)
structural superfamilyA DNA-binding domain in eukaryotic transcription factors;Leucine zipper domain;
sequence familybZIP Maf transcription factor;
multimeric complexes4eot_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNYAR

Estimated binding specificities ?

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# IC=7.822 IC/col=0.978 n_of_columns=8 specificity:   
A |  96   0  11  20  67   0   0  96
C |   0  96   9  48  10   0  96   0
G |   0   0   9  19  19  96   0   0
T |   0   0  67   9   0   0   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: MAFA
TGACTCAPubMed4eot_A(4.68e-04)

Dendrogram of similar interfaces ?

matrix format
  
  ------------RG----NC----YGAT--RC--   L                              +4eot_A    
                                                               +------2 
  ------------RG----NC----YGATCTRG--   L               +-------3      +2wt7_B    
                                                       !       ! 
  QG------QC----FTRC----------------   L             +-4       +-------7aw7_D    
                                                     ! ! 
  --RA--NA----AAVT--STRG------------   L      +------5 +---------------1h89_A    
                                              !      ! 
  --RG--QGNART--AGQT--FTRG----------   L      !      !               +1gd2_G    
                                           +--6      +---------------1 
  ----RA--NT----AAVT--STRG----------   L   !  !                      +1hjb_A    
                                         --7  ! 
  --------------------------NCAAATRT   L   !  +-----------------------1a02_F    
                                           ! 
  ----RA--NT----ATVT--STRG----------       +--------------------------6mg1_B    
                                         

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updated Fri Sep 13 18:09:41 2024