2wt7_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE BZIP HETERODIMERIC COMPLEX MAFB:CFOS BOUND TO DNA (TRANSCRIPTION FACTOR MAFB)
reference	Pogenberg et al. Structure 22 466 2014
source	MUS MUSCULUS
experiment	X-ray (resolution=2.30, R-factor=0.230)
structural superfamily	A DNA-binding domain in eukaryotic transcription factors;
sequence family	bZIP Maf transcription factor;
multimeric complexes	2wt7_AB 2wty_AB 4auw_AB 4auw_EF
redundant complexes	2wty_A 4auw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2wt7_B interface=31,35,38,39,42,43, dqlvsmsvrelnrhlrgftkdevirlkqkrRtlkNrgYAqsCRykrvqqkhhlenektqliqqveqlkqevsrlarerdaykvkseklan
interface signature	RNYACR

Estimated binding specificities ?

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# IC=6.711 IC/col=0.839 n_of_columns=8

specificity:

A |   9   0   0   9  24  96   0  11
C |   9   0  96   9  24   0  96   9
G |   9  96   0   9  24   0   0   9
T |  69   0   0  69  24   0   0  67

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: MAFB
GTCAGCTGAC	PubMed	2wt7_B(2.78e-03), 4auw_B(3.16e-03)

Dendrogram of similar interfaces ?

matrix format

  
  ------RG----NC----YGATCTRG   L                    +--------2wt7_B    
                                                  +-2 
  --------RA--NA----AAVTSTRG   L                  ! !      +-1h89_A    
                                   +--------------3 +------1 
  --QG----QC--FTRC----------   L   !              !        +-7aw7_D    
                                 --4              ! 
  RA--NT--AAVT--STRG--------   L   !              +---------1hjb_A    
                                   ! 
  ------------NC----AAAT--RT   L   +-------------------------1a02_F

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updated Fri Sep 13 16:45:39 2024