| structure name | NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC (HOMEOTIC BICOID PROTEIN) |
| source | DROSOPHILA MELANOGASTER |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RIKNRR |
Estimated binding specificities ?
readout + contact |  |
A | 0 0 96 54 0 0 0 13 C | 96 0 0 13 0 96 96 57 G | 0 0 0 13 0 0 0 13 T | 0 96 0 16 96 0 0 13scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: BICOID | ||
| TAATCC | PubMed | 1zq3_P(3.74e-09) |
| TAATCCC | PubMed | 1zq3_P(1.48e-07) |
Dendrogram of similar interfaces ?
matrix format----RT--QTVAQTNA------ L +8osb_E +--------1 RA--RA----IAQTNA------ L ! +5ego_B +-----5 --RART----VTKGNA--KA-- L ! ! +2lkx_A ! +-------3 ----RT----NT--NA------ L ! +1b72_B +-----------7 ----RT----IAQCNAMG---- L ! ! +----1b72_A ! ! +-----4 ----RC----IAQCNAYC---- L ! ! ! +----3rkq_B --8 +---6 ----------NCICNARGRG-- L ! ! +4xrm_B ! +----------2 ------RT--NT--NAIARG-- L ! +4cyc_B ! ----------------YCFAKC L +--------------------------6pe2_B |
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updated Sat Jan 10 05:06:59 2026