| structure name | NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC (HOMEOTIC BICOID PROTEIN) |
| source | DROSOPHILA MELANOGASTER |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RIKNRR |
Estimated binding specificities ?
readout + contact |  |
A | 13 0 0 96 13 0 96 0 C | 13 0 0 0 13 0 0 0 G | 54 96 96 0 13 0 0 96 T | 16 0 0 0 57 96 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: BICOID | ||
| TAATCC | PubMed | 1zq3_P(3.74e-09) |
| TAATCCC | PubMed | 1zq3_P(1.48e-07) |
Dendrogram of similar interfaces ?
matrix format--RG----------IT--KGNA--RGRA---- L +1zq3_P +--7 --RARA--------IA--QTNA--MC------ L +----8 +1puf_A ! ! ----RA--------IA--QTNA---------- L ! +---6es3_K ! RT--RT------KTIA--QCNA------RT-- L +--10 +1ig7_A ! ! +-2 --RCRT--------NT----NA--ITRG---- L ! ! +----5 +5zjt_B ! ! ! ! RC--RT--------IT--QCNA--ACRG---- L ! +---9 +6a8r_A +--11 ! ----RA--------IT--QTNA--MG------ L ! ! ! +5zjt_E ! ! +----3 ----RT--------NT----NA---------- L ! ! +1b72_B ! ! ----RT--------IA--KGNA---------- L +-12 ! +2hdd_A ! ! +------------1 --------------IA----NA---------- ! ! +4qtr_D ! ! ----RT--------NT----NA----RG---- L +-13 ! +1b8i_B ! ! +----------------6 --------------NC--ITNA--RGRG---- L ! ! +6fqq_E ! ! ----RTSTVC--KGDC--RG------------ L +-14 ! +1w0t_A ! ! +------------------4 ----RA----------KGSA--QA-------- L ! ! +6j5b_C +-15 ! --------RTQT--IT--QANA--VTKTKT-- L ! ! +---------------------2ld5_A -16 ! RT--RT--------IA--QTNA--SG------ L ! +-----------------------5zfz_A ! RA--RT--------IT--QTNA--SGRA--RC L +--------------------------6u81_A |
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updated Tue Dec 19 06:17:59 2023