| structure name | FIVE-FINGER GLI/DNA COMPLEX (PROTEIN FIVE-FINGER GLI) |
| reference | Pavletich et al. Science 261 1701 1993 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.60, R-factor=0.228) |
| structural superfamily | C2H2 and C2HC zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | AYRNASDKRDPSSRK |
Estimated binding specificities ?
| readout + contact |  |
A | 0 68 0 0 96 88 0 8 64 96 24 24 12 20 C | 0 8 96 96 0 8 96 88 12 0 24 24 60 4 G | 96 16 0 0 0 0 0 0 8 0 24 24 12 64 T | 0 4 0 0 0 0 0 0 12 0 24 24 12 8scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GLI | ||
| CCAAT | PubMed | 2gli_A(1.04e-02) |
| GACCACCCAC | PubMed | 2gli_A(1.23e-07) |
| GACCACCCA | PubMed | 2gli_A(8.56e-09) |
| TGGGGGGT | PubMed | 2gli_A(1.72e-03) |
Dendrogram of similar interfaces ?
matrix formatAT--YC------RA----NC----ATSGDC--KG--DCPTSGSARTKG-- L +------2gli_A +------------3 KT--STHT----RG--DAQARGRGSTDCHG--TT--RG--DAEG--RG-- L +---5 +------6b0o_A ! ! ----------NGKT--WTKG------HTHG--RGTGTT--ACNA--KGRG L +-6 +-------------------1tf3_A ! ! ------------RGSTDAHARGRGSTDCHG--TT--RG--DAEG--RG-- L ! +-----------------------5kl3_A ! ------------QA--TCNA--QAHTTT----QA--TTLAHGTCDTRG-- L --7 +1g2d_F ! +--1 EC--SCKGRG--LT--FCNA--QA--TTNA-------------------- L ! +---------------2 +1ubd_C ! ! ! --TCYCKARG--QA----TC--RA--SCDC--VT---------------- +------4 +--5yeg_A ! ----------RGST--YGYC--QC--TGSTRGYT---------------- +------------------4is1_C |
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updated Tue Dec 17 22:44:47 2024