3kmp_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SMAD1-MH1/DNA COMPLEX (SMAD1-MH1)
reference	Baburajendran et al. 'Nucleic 38 3477 2010
source	MUS MUSCULUS
experiment	X-ray (resolution=2.70, R-factor=0.208)
structural superfamily	SMAD MH1 domain;
sequence family	MH1 domain;
multimeric complexes	3kmp_AB 5x6g_AB 5x6m_AB 5x6m_EF 6fzs_AB 6fzt_AB
reference complex	6fzs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kmp_A interface=66,68,73, ftspavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalscpgqpsncvtiprsldgRlQvshrKglphviycrvwrwpdlqshhelkpleccefpfgskqkevcinpyhykrves
interface signature	RQK

Estimated binding specificities ?

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# IC=5.766 IC/col=0.961 n_of_columns=6

specificity:

A |   0   0  13   0   0  54
C |   0   0  13  96   0  16
G |   0  96  16   0   0  13
T |  96   0  54   0  96  13

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Dendrogram of similar interfaces ?

matrix format

  
  DCRGQC--KG   L            +-6fzt_A    
                            ! 
  --RGQA--KG   L   +--------5   +3kmp_A    
                   !        ! +-1 
  --RGQAHTKG   L   !        +-3 +5x6g_A    
                   !          ! 
  DCRGQC--KG   L --6          +6zmn_B    
                   ! 
  DCRGQC--KG   L   !          +6tbz_A    
                   !        +-2 
  --RGQC--KG   L   +--------4 +5od6_A    
                            ! 
  --RGQA--KA   L            +-6h3r_A

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updated Thu Sep 12 17:29:19 2024