interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURAL CHARACTERIZATION OF H3K56Q NUCLEOSOMES AND NUCLEOSOMAL ARRAYS
(HISTONE H3.2)
referenceLilyestrom et al. Biochim.Biophys.Acta 1799 480 ?
sourceXENOPUS LAEVIS
experimentX-ray (resolution=3.50, R-factor=0.368)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3kwq_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--------                                +8jh2_e    
                             +--------------2 
  RG--RT----       +---------6              +8grq_A    
                   !         ! 
  RGLCRT----       !         +---------------8hr1_E    
                   !  
  ----RA----       !                       +--7xsx_a    
                   !         +-------------4 
  ------RA--     -11     +---7             +--6g0l_D    
                   !     !   ! 
  ----RG----       !  +--8   +----------------8ox0_C    
                   !  !  ! 
  ----RG----       !  !  +--------------------5x0y_G    
                   !  !  
  ----RG----       +-10                        +8txv_G    
                      !         +--------------1 
  ----RA----          !         !              +1zla_C    
                      ! +-------5 
  ----RT----          ! !       !            +-8u14_G    
                      +-9       +------------3 
  ----RG----            !                    +-8jla_C    
                        ! 
  ----RA--RA            +----------------------6a5l_g    
                 

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updated Sun Aug 3 07:10:32 2025