1zla_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	X-RAY STRUCTURE OF A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE BOUND TO THE NUCLEOSOMAL CORE
reference	Chodaparambil et al. Science 311 856 2006
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1zla_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zla_C interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnwerdnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt

  
  --RA----                                     +1zla_C    
                                +--------------1 
  --RG----                 +----2              +8ox0_C    
                           !    ! 
  --RA--RA               +-3    +--------------6a5l_g    
                         ! ! 
  --RG----           +---4 +-------------------5x0y_G    
                     !   ! 
  --RG----         +-5   +---------------------8jla_C    
                   ! ! 
  ----RA--       +-6 +-------------------------6g0l_D    
                 ! ! 
  LCRT----     --7 +--------------------------8hr1_E    
                 ! 
  --RT----       +--------------------------8grq_A

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updated Tue Dec 17 22:33:22 2024