interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameRNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1aoi_ABCDEFGH 1s32_ABCDEFGH 2cv5_ABCDEFGH 2nzd_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3kuy_ABCDEFGH 3kwq_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3w97_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wkj_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1v_ABCDEFGH 4xzq_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4ys3_ABCDEFGH 4z5t_ABCDEFGH 4z66_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b40_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gt3_ABCDEFGH 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5mlu_ABCDEFGH 5x7x_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6ir9_ABEWabcdef 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6jm9_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9h_ABCDEFGH 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6le9_ABCDEFGH 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6muo_ABCDEFGHM 6mup_ABCDEFGHMN 6o1d_ABCDEFGH 6r0c_ABCDEFGH 6r1t_ABCDEFGH 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6yov_ABCDEFGHKL 6z6p_ABCDEFGHM 6z6p_KN 7a08_bcdefghi 7bwd_ABCDEFGHLM 7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7cow_ABCDEFGHKLMNOPQRST 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7e8i_ABCDEFGH 7ea5_ABCDEFGH 7ea8_ABCDEFGH 7jo9_ABCDEFGH 7joa_ABCDEFGH 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7k6p_ABCDEFGH 7k6q_ABCDEFGHK 7ktq_ABCDEFGH 7nl0_ABCDEFGH 7r5r_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7tan_ABCDEFGH 7u0j_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7vbm_ABCDEFGH 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7wbw_Mg 7xcr_ABCDEFGH 7xct_ABCDEFGHL 7xd0_ABCDEFGHKL 7xd1_ABCDEFGH 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y7i_ABCDEFGH 7yqk_ABCDEFGH 7ywx_ABCDEFGLNVW 8dk5_ABCDEFGH 8evg_ABCDEFGH 8g57_ABCDEFGH 8grq_ABCDEFGH 8guk_ABCDEFGH 8hak_ABCDEFGH 8he5_Eh 8hr1_ABCDEFGH 8ieg_CDEFGHKL 8jbx_ABCDEFGH 8jcc_ABCDEFGH 8jcd_ABCDEFGH 8jh2_gh 8jl9_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8jnd_LNPQ 8jne_ABCDEFGH 8jne_KN 8jne_MQS 8kb5_ABCDEFGH 8pkj_ABCDEFGH 8syp_ABCDEFGH 8vfx_ABCDEFGH 8wg5_ABCDEFGH 8x7k_ABCDEFGH 8ybj_ABCDEFGH 8ybk_ABCDEFGH 8yti_ABCDEFGH 8yti_KLMNOPQR 8yti_UV 9fgq_ABCDEFGH 9fh9_ABCDEFGH
redundant complexes2cv5_C 3afa_C 3azh_C 3azn_C 3mgp_G 3x1v_G 4ym5_G 4z66_C 5avc_G 5b0y_G 5b0z_G 5b2i_C 5b32_D 5cpk_C 5gt3_C 5kgf_G 6hkt_w 6iq4_G 6j51_g 6ke9_G 6l9z_C 6la2_g 6lab_M 6r8z_G 6r91_C 6r92_C 6r93_G 6sef_C 6x5a_G 7by0_C 7cow_C 7d20_G 7r5r_G 7u46_G 7u52_G 7v96_Q 7v9j_C 7v9k_G 7vz4_G 7wbv_g 7xd1_G 7xvm_C 7xzy_C 7y00_G 8gui_G 8guk_G 8hah_C 8jcd_C 8jnd_Q 8jnf_P 8ott_D 8pkj_C 8sps_G 1aoi 1s32 2nzd 3a6n 3an2 3av1 3av2 3ayw 3aze 3azf 3azg 3azi 3azj 3azk 3azl 3azm 3kuy 3kwq 3lz0 3lz1 3mgq 3mgr 3mgs 3mnn 3w97 3w98 3w99 3wkj 3wtp 3x1s 4xzq 4ym6 4ys3 4z5t 5av5 5av6 5av8 5av9 5avb 5ay8 5b1l 5b1m 5b24 5b2j 5b31 5b40 5cpi 5cpj 5gse 5gtc 5gxq 5jrg 5mlu 5x7x 5xf3 5xf4 5xf5 5xm0 5xm1 5y0c 5y0d 5zbx 6a5o 6a5p 6a5r 6a5t 6a5u 6buz 6c0w 6e0c 6e0p 6fq5 6fq6 6fq8 6inq 6ipu 6ir9 6j4w 6j4x 6j4y 6j4z 6j50 6jm9 6jr0 6jr1 6jxd 6kvd 6kxv 6l49 6l4a 6l9h 6la8 6la9 6le9 6ler 6m3v 6m44 6muo 6mup 6o1d 6r0c 6r1t 6r8y 6r90 6r94 6se0 6se6 6see 6seg 6t90 6t93 6upk 6upl 6usj 6v2k 6x59 6xjd 6y5d 6yov 6z6p 7a08 7bwd 7bxt 7c0m 7ccq 7ccr 7d1z 7dbh 7dbp 7e8d 7e8i 7ea5 7ea8 7jo9 7joa 7k5x 7k5y 7k60 7k61 7k63 7k6p 7k6q 7ktq 7nl0 7scy 7scz 7tan 7u0g 7u0i 7u0j 7u47 7u4d 7u50 7u51 7u53 7uv9 7v90 7v9c 7v9s 7va4 7vbm 7w9v 7wbw 7wbx 7xcr 7xct 7xd0 7xse 7xsx 7xsz 7xt7 7xtd 7xvl 7xx5 7xx6 7xzx 7xzz 7y7i 7yqk 7ywx 8atf 8dk5 8evg 8evh 8evi 8evj 8g57 8grq 8guj 8h0v 8h0w 8hag 8hai 8haj 8hak 8hal 8ham 8han 8he5 8hr1 8ieg 8jbx 8jcc 8jh2 8jh3 8jh4 8jl9 8jlb 8jld 8jne 8kb5 8osj 8osk 8osl 8ots 8pki 8rbx 8spu 8syp 8vfx 8vfy 8vfz 8vg0 8vg1 8vg2 8wg5 8x7k 8xbt 8xbu 8ybj 8ybk 8yti 8yv8 9fgq 9fh9
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RC                                   +---6qld_f    
                 +-------------------------3 
  ----RA       +-6                         +---7xsx_a    
               ! ! 
  --KT--   L   ! +-----------------------------7cvo_A    
               ! 
  LC----     --7                             +5mlu_A    
               !              +--------------2 
  LT----       !              !              +4z5t_A    
               +--------------5 
  ----RA                      !                +7ea8_A    
                              ! +--------------1 
  ----RT                      +-4              +8g57_E    
                                ! 
  LT--RC                        +--------------5xm1_A

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updated Tue Dec 19 12:14:14 2023