Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7lyb_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH
redundant complexes8upf_C 7lyb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RG------             +-----------------------------5x0y_G    
                          +-19  
  ------RG------          !  +-----------------------------8ox0_C    
                          !  
  ------RA------          !                              +1zla_C    
                          !        +---------------------3 
  ------RA----RA          !        !                     +6a5l_g    
                          !     +-11  
  KG----RT------          !     !  !                      +7kbd_C    
                          !     !  +----------------------1 
  ------RG------          !     !                         +8jla_C    
                          !     !  
  ------RC------          !     !               +---------7on1_c    
                       +-20  +-16           +---7 
  --LC--RT------       !  !  !  !           !   +---------8hr1_E    
                       !  !  !  !  +--------8 
  ----------KG--       !  !  !  !  !        !         +---7nkx_f    
                       !  !  !  !  !        +---------5 
  --LA--RG------       !  !  !  !  !                  !   +7unc_a    
                       !  !  !  +-12                  +---2 
  ------RT------       !  !  !     !                      +8grq_A    
                       !  !  !     !  
  ----KT--------   L   !  !  !     !                 +----7cvo_A    
                       !  !  !     +-----------------6 
  --------RA----       !  !  !                       +----6g0l_D    
                       !  +-18  
  ------RC------       !     !                               +---7xyf_B    
                     -21     !                  +------------4 
  --IT----------       !     !              +---9            +---3wkj_D    
                       !     !              !   ! 
  --LT--RC------       !     !           +-10   +----------------3kwq_E    
                       !     !           !  !  
  ------RG------       !     !        +-13  +--------------------6iy2_A    
                       !     !        !  !  
  ------RG------       !     !     +-14  +-----------------------7ccr_A    
                       !     !     !  !  
  --LT--RC------       !     !  +-15  +------------------------4xzq_E    
                       !     !  !  !  
  ------RT------       !     +-17  +-------------------------7zs9_e    
                       !        !  
  ------RG------       !        +--------------------------7y7i_E    
                       !  
  ------RT------       +-----------------------------5z23_C    
                     

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updated Wed Dec 18 19:41:58 2024