Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7lyb_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH
redundant complexes8upf_C 7lyb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA------                                          +1zla_C    
                                           +--------------4 
  ------RG------                      +---11              +8ox0_C    
                                      !    !  
  ------RA----RA             +-------14    +--------------6a5l_g    
                             !        !  
  ------RG------             !        +-------------------5x0y_G    
                             !  
  KG----RT------             !                                   +7kbd_C    
                             !                    +--------------1 
  ------RG------             !        +-----------9              +8jla_C    
                             !        !           ! 
  ------RT------             !        !           +--------------5z23_C    
                             !        !  
  ------RC------             !        !          +----------------7on1_c    
                             !        !       +-12  
  ----------KG--             !        !       !  !            +---7nkx_f    
                             !        !       !  +------------6 
  --LA--RG------          +-19     +-16       !               !   +7unc_a    
                          !  !     !  !       !               +---3 
  ------RT------          !  !     !  !    +-13                   +8grq_A    
                          !  !     !  !    !  !  
  --LT--RC------          !  !     !  !    !  !                  +3kwq_E    
                          !  !     !  !    !  !   +--------------5 
  --LC--RT------          !  !     !  !    !  +--10              +8hr1_E    
                          !  !     !  +---15      !  
  ------RG------          !  !     !       !      +--------------7ccr_A    
                          !  !  +-17       !  
  ------RC------          !  !  !  !       !                 +---7xyf_B    
                       +-20  !  !  !       !          +------7 
  ----KT--------   L   !  !  !  !  !       !          !      +---7cvo_A    
                       !  !  !  !  !       +----------8 
  --IT----------       !  !  +-18  !                  !          +3wkj_D    
                       !  !     !  !                  +----------2 
  --------RA----       !  !     !  !                             +6g0l_D    
                     -21  !     !  !  
  ------RG------       !  !     !  +---------------------------6iy2_A    
                       !  !     !  
  --LT--RC------       !  !     +---------------------------4xzq_E    
                       !  !  
  ------RT------       !  +----------------------------7zs9_e    
                       !  
  ------RG------       +----------------------------7y7i_E    
                     

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updated Mon Aug 4 02:22:11 2025