Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7lyb_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH
redundant complexes8upf_C 7lyb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  KG----RT--             +-----------------------------7kbd_C    
                         !  
  --------KG             !                           +---7nkx_f    
                         !  +------------------------2 
  --LA--RG--             !  !                        +---7unc_a    
                      +-11  !  
  ------RC--          !  !  !                             +---7xyf_B    
                      !  !  !                +------------1 
  --IT------          !  !  !            +---3            +---3wkj_D    
                      !  !  !            !   ! 
  ----KT----   L      !  !  !         +--4   +----------------7cvo_A    
                      !  +-10         !  ! 
  --LT--RC--          !     !       +-5  +--------------------3kwq_E    
                      !     !       ! ! 
  ------RG--       +-12     !     +-6 +-----------------------6iy2_A    
                   !  !     !     ! ! 
  ------RG--       !  !     !   +-7 +------------------------7ccr_A    
                   !  !     !   ! ! 
  --LT--RC--       !  !     ! +-8 +-------------------------4xzq_E    
                   !  !     ! ! ! 
  ------RT--     -13  !     +-9 +--------------------------7zs9_e    
                   !  !       ! 
  ------RG--       !  !       +--------------------------7y7i_E    
                   !  !  
  ------RC--       !  +-----------------------------7on1_c    
                   !  
  ------RT--       +-----------------------------5z23_C    
                 

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updated Sat Sep 14 12:14:39 2024