5x0y_G : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME (HISTONE H2A)
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 2fj7_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kxb_ABCDEFGH 3lja_ABCDEFGH 3mvd_ABCDEFGHKL 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 5f99_ABCDEFGH 5hq2_ABGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5ong_ABCDEFGH 5x0y_ABCDEFGHO 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6esi_ABCDEFGH 6iro_ABCDEFGHL 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6nj9_ABCDEFGH 6nn6_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6s01_ABCDEFGHK 6tem_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 7at8_ADEFGHIJK 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7swy_ABCDEFGH 7tn2_ABCDEFGHW 7xpx_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8g86_ABCDEFGH 8siy_CDEFGHIJ 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH
redundant complexes	1m19_G 1p34_G 1p3a_G 1p3g_C 1p3i_G 1p3k_G 1p3m_G 1zbb_G 3c1c_G 3reh_C 3rej_G 3rek_C 3uta_C 3utb_G 4wu8_C 5f99_C 5ong_G 6esf_G 6esg_G 6pwx_M 6wz5_G 7crp_C 7enn_C 7oha_G 7ohb_G 7xpx_G 8f86_G 8g8b_C 8g8g_C 8hxz_C 8ihm_G 8v7l_C 1m18 1m1a 1p3b 1p3f 1p3l 1p3o 1p3p 2fj7 3c1b 3kxb 3lja 3mvd 3rei 3rel 3tu4 3ut9 4r8p 4wu9 5hq2 5nl0 5z3l 5z3o 5z3u 5z3v 6esh 6esi 6iro 6jyl 6k1p 6nj9 6nn6 6nog 6nqa 6pa7 6pww 6r1u 6r25 6s01 6tem 6vyp 6wz9 6x0n 7at8 7cro 7crq 7crr 7eg6 7egp 7oh9 7ohc 7swy 7tn2 7yi1 7zs9 7zsa 7zsb 8aag 8cbn 8cbq 8ceo 8cww 8cze 8g86 8g88 8pc5 8pc6 8peo 8pep 8siy 8t3t 8t3w 8t3y 8v4y 8v6v
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x0y_G interface=31, akaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

  
  --RT               +-----------------------------7jzv_N    
                   +-1 
  --RT           +-2 +-----------------------------8com_C    
                 ! ! 
  --RC         +-3 +-----------------------------7nkx_a    
               ! ! 
  --RT       +-4 +-----------------------------7on1_e    
             ! ! 
  --RA     --5 +-----------------------------5mlu_F    
             ! 
  IT--       +-----------------------------6r8y_H

home
updated Wed Dec 18 02:43:35 2024