Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nqa_ABCDEFGH 7lyc_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH
redundant complexes6nqa 7lyc 8txw 8txx
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RG------          +-----------------------------5x0y_G    
                          !  
  ------RA------          !                               +1zla_C    
                          !                +--------------2 
  ------RG------          !           +----8              +8ox0_C    
                          !           !    ! 
  ------RA----RA          !  +-------11    +--------------6a5l_g    
                          !  !        !  
  ------RG------       +-20  !        +-------------------8jla_C    
                       !  !  !  
  KG----RT------       !  !  !      +----------------------7kbd_C    
                       !  !  !      !  
  ------RC------       !  !  !      !             +---------7on1_c    
                       !  !  !      !     +-------6 
  --LA--RG------       !  !  !      !     !       !        +7unc_a    
                       !  !  !  +--14     !       +--------3 
  ------RT------       !  +-19  !   !  +-10                +8hr1_E    
                       !     !  !   !  !  !  
  ----------KG--       !     !  !   !  !  !             +---7nkx_f    
                       !     !  !   !  !  +-------------5 
  --------RA----       !     !  !   +-12                +---6g0l_D    
                       !     !  !      !  
  ------RG------       !     !  !      !                    +7ccr_A    
                       !     !  !      !     +--------------1 
  ------RT------       !     !  !      +-----7              +8grq_A    
                     -21     !  !            ! 
  ------RT------       !     +-18            +--------------7zs9_e    
                       !        !  
  ------RC------       !        !                            +---7xyf_B    
                       !        !               +------------4 
  --IT----------       !        !           +---9            +---3wkj_D    
                       !        !           !   ! 
  ----KT--------   L   !        !        +-13   +----------------7cvo_A    
                       !        !        !  !  
  --LT--RC------       !        !     +-15  +--------------------3kwq_E    
                       !        !     !  !  
  ------RG------       !        !  +-16  +-----------------------6iy2_A    
                       !        !  !  !  
  --LT--RC------       !        +-17  +------------------------4xzq_E    
                       !           !  
  ------RG------       !           +-------------------------7y7i_E    
                       !  
  ------RT------       +-----------------------------5z23_C    
                     

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updated Wed Dec 18 19:37:28 2024