Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nqa_ABCDEFGH 7lyc_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH
redundant complexes6nqa 7lyc 8txw 8txx
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RT--             +-----------------------------5z23_C    
                      +-11  
  KG----RT--          !  +-----------------------------7kbd_C    
                      !  
  ------RC--          !           +-------------------7on1_c    
                      !  +--------4 
  --------KG          !  !        !               +---7nkx_f    
                   +-12  !        +---------------2 
  --LA--RG--       !  !  !                        +---7unc_a    
                   !  !  !  
  ------RC--       !  !  !                           +---7xyf_B    
                   !  !  !              +------------1 
  --IT------       !  !  !          +---3            +---3wkj_D    
                   !  +-10          !   ! 
  --LT--RC--       !     !       +--5   +----------------3kwq_E    
                   !     !       !  ! 
  ------RG--     -13     !     +-6  +--------------------6iy2_A    
                   !     !     ! ! 
  ------RG--       !     !   +-7 +-----------------------7ccr_A    
                   !     !   ! ! 
  --LT--RC--       !     ! +-8 +------------------------4xzq_E    
                   !     ! ! ! 
  ------RT--       !     +-9 +-------------------------7zs9_e    
                   !       ! 
  ------RG--       !       +--------------------------7y7i_E    
                   !  
  ----KT----   L   +-----------------------------7cvo_A    
                 

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updated Sat Sep 14 12:10:25 2024