Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nqa_ABCDEFGH 7lyc_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH
redundant complexes6nqa 7lyc 8txw 8txx
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RG------          +-----------------------------5x0y_G    
                       +-20  
  ------RG------       !  +-----------------------------8ox0_C    
                       !  
  ------RA------       !                                +1zla_C    
                       !          +---------------------5 
  ------RA----RA       !          !                     +6a5l_g    
                       !     +---15  
  ------RT------       !     !    !                      +5z23_C    
                       !     !    +----------------------1 
  ------RG------       !     !                           +8jla_C    
                       !     !  
  KG----RT------       !     !     +-------------------------7kbd_C    
                       !     !     !  
  ------RC------       !     !     !     +-------------------7on1_c    
                     -21     !     !  +-12  
  ----------KG--       !     !     !  !  !               +---7nkx_f    
                       !  +-18  +-16  !  +---------------6 
  --LA--RG------       !  !  !  !  !  !                  +---7unc_a    
                       !  !  !  !  !  !  
  ------RC------       !  !  !  !  !  !                   +---7xyf_B    
                       !  !  !  !  !  !            +------7 
  ----KT--------   L   !  !  !  !  +-14            !      +---7cvo_A    
                       !  !  !  !     !  +---------8 
  --IT----------       !  !  !  !     !  !         !          +3wkj_D    
                       !  !  !  !     !  !         +----------2 
  --------RA----       !  !  !  !     !  !                    +6g0l_D    
                       !  !  !  !     !  !  
  ------RG------       !  !  +-17     !  !                      +7ccr_A    
                       +-19     !     +-13       +--------------3 
  ------RT------          !     !        !     +-9              +8grq_A    
                          !     !        !     ! ! 
  ------RT------          !     !        !  +-10 +--------------7zs9_e    
                          !     !        !  !  !  
  --LT--RC------          !     !        !  !  !              +3kwq_E    
                          !     !        +-11  +--------------4 
  ------RT------          !     !           !                 +8hr1_E    
                          !     !           !  
  ------RG------          !     !           +-----------------6iy2_A    
                          !     !  
  --LT--RC------          !     +-------------------------4xzq_E    
                          !  
  ------RG------          +----------------------------7y7i_E    
                     

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updated Mon Aug 4 02:18:04 2025