3uk3_C : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA (Zinc finger protein 217)
reference	Vandevenne et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.10, R-factor=0.225)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
multimeric complexes	3uk3_CD 4is1_CD
redundant complexes	4f2j_C 4is1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3uk3_C interface=11,12,14,15,40,42,43,45,46, recsycgkffRSnYYlnihlrthtgekpykcefceyaaaQkTSlRYhlerhh
interface signature	RSYYQTSRY

Estimated binding specificities ?

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# IC=8.247 IC/col=1.031 n_of_columns=8

specificity:

A |   0  12   0  84   0  96  96  12
C |   0  12  96   0   0   0   0  12
G |   0  60   0   0  96   0   0  12
T |  96  12   0  12   0   0   0  60

scan!

Dendrogram of similar interfaces ?

matrix format

  
  NT--STNA--VTQTSTSGKGRG   L         +-----------------------------6u9q_A    
                                   +-1 
  DG--YCKG--RGQA----TC--   L     +-2 +-----------------------------5k5h_A    
                                 ! ! 
  RG--DCKG--------------   L   +-3 +-----------------------------7n5s_A    
                               ! ! 
  RGSTDCHGTTTTRG--DAECRG   L --4 +-----------------------------1llm_D    
                               ! 
  ------TG----RA--SCDC--   L   +-----------------------------5yel_A

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updated Fri Sep 13 17:48:54 2024