interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF NO-DNA FACTOR
(Nucleoid occlusion factor SlmA)
referenceProc.Natl.Acad.Sci.USA 110 10586 2013
sourceEscherichia coli
experimentX-ray (resolution=2.65, R-factor=0.230)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes4gck_ABCD 4gcl_ABCD 4gcl_EGH 5hbu_ABCD 5hbu_EGH 5k58_ABEF
reference complex4gck_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSEAAYR

Estimated binding specificities ?

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# IC=6.633 IC/col=0.948 n_of_columns=7 specificity:   
A |  67   0   9   9  96   0   0
C |   9  96   9  67   0  96   0
G |   9   0  11  11   0   0   0
T |  11   0  67   9   0   0  96
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updated Thu Sep 12 19:23:53 2024