interface graph thumbnail
legend  pdf

structure nameTHE STRUCTURE OF FIXK2 FROM BRADYRHIZOBIUM JAPONICUM
(FixK2 protein)
referenceGruetter et al. J.Biol.Chem. 288 14238 2013
sourceBradyrhizobium japonicum
experimentX-ray (resolution=1.77, R-factor=0.185)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
multimeric complexes4i2o_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTLETSR

Estimated binding specificities ?

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# IC=3.571 IC/col=0.893 n_of_columns=4 specificity:   
A |  16   0   1  88
C |  16   0   2   2
G |  19   0  92   2
T |  45  96   1   4
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --HT--STAT--STRG----------   L     +-----------------------------5lej_A    
                                   +-2 
  ----RT----VG--RT----------       ! !                             +8h40_X    
                                 --3 +-----------------------------1 
  --ITRGECSC--SGKG----------   L   !                               +5i2d_R    
                                   ! 
  TT----KATT--QTTGLTRTKAFTYT   L   +-----------------------------2p7c_B    
                                 

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updated Sun Aug 3 08:07:54 2025