| structure name | ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (Zinc uptake regulation protein) |
| reference | 'Plos 12 e1001987 2014 |
| source | Escherichia coli |
| experiment | X-ray (resolution=2.50, R-factor=0.236) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Ferric uptake regulator family; |
| multimeric complexes | 4mtd_ABCD 4mte_ABCD |
| redundant complexes |  4mte_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YKPPYR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 96 29 57 96 0 96 C | 0 0 13 13 0 96 0 G | 0 0 13 13 0 0 0 T | 96 0 41 13 0 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: Zur | ||
| GATATGTTATTACATTAC | PubMed | 4mtd_D(1.89e-05), 4mtd_ABCD(5.11e-15), 4mte_ABCD(1.20e-12), ... (total=4) |
Dendrogram of similar interfaces ?
matrix format----YA--KTPTPG--YTRG-------------- L +--4mtd_D +----------3 KA------SG--AT--YTRG-------------- L +------7 +--4rb3_D ! ! --TT--------KATTQTTGLTRT--KA--FTYT L ! +-------------2p7c_B ! --------------------YG------------ ! +3eyi_B +----9 +--------2 ----LT--NTHG--RTYTPT-------------- L ! ! ! +6qil_A ! ! +------6 --------------------YGRG---------- ! ! ! ! +4wcg_A ! ! ! ! +----1 ------------------RGYG------------ +-10 +---8 +----5 +1qbj_C ! ! ! ! --------STKTPTTTFT---------------- L ! ! ! +----4aso_F ! ! ! ------ATQAPTPG--RGQG--------RT---- L +-11 ! +----------------4iht_D ! ! ! --------TTRGECRTRCQT-------------- L ! ! +-------------------------1rio_H ! ! ------------------ITQCNAACRG------ L -12 ! +----6a8r_A ! +----------------------4 ------------VT--KGDCRGTA---------- L ! +----1w0u_A ! ------------------IA--NA---------- +----------------------------4xrs_G |
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updated Tue Dec 19 09:08:41 2023