5b40_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE NUCLEOSOME STRUCTURE CONTAINING H2B-K120 AND H4-K31 MONOUBIQUITINATIONS
reference	Kurumizaka et al. 'To ? ? ?
experiment	X-ray (resolution=3.33, R-factor=0.205)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5b40_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5b40_A interface=1,9,25, YrpgtvalReirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlaaihakrvtimpkdiqlarrirger

  
  --RT----         +-----------------------------8grq_A    
                 +-8 
  LCRT----       ! +-----------------------------8hr1_E    
                 ! 
  --RA----       !                              +1zla_C    
                 !                +-------------3 
  --RA--RA       !                !             +6a5l_g    
                 !                ! 
  --RG----     --9              +-5                +8txv_G    
                 !              ! ! +--------------1 
  --RG----       !              ! ! !              +5x0y_G    
                 !              ! +-4 
  --RT----       !       +------6   !              +8u14_G    
                 !       !      !   +--------------2 
  --RG----       !       !      !                  +8ox0_C    
                 +-------7      ! 
  --RG----               !      +--------------8jla_C    
                         ! 
  ----RA--               +---------------------6g0l_D

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updated Sun Aug 3 08:49:39 2025