5b40_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE NUCLEOSOME STRUCTURE CONTAINING H2B-K120 AND H4-K31 MONOUBIQUITINATIONS
reference	Kurumizaka et al. 'To ? ? ?
experiment	X-ray (resolution=3.33, R-factor=0.205)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5b40_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5b40_A interface=1,9,25, YrpgtvalReirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlaaihakrvtimpkdiqlarrirger

  
  --LC----                                  +5mlu_A    
                                          +-1 
  ------RT                           +----2 +8g57_E    
                                     !    ! 
  RG------                      +----5    +6pww_K    
                                !    ! 
  --LT--RC                      !    !    +5xm1_A    
                                !    +----3 
  ------RA          +-----------7         +7ea8_A    
                    !           ! 
  RC------          !           !  +-------6fq8_A    
                    !           +--6 
  ------RA       +--8              !    +--7xsx_a    
                 !  !              +----4 
  ------RC       !  !                   +--6qld_f    
               --9  ! 
  --LT----       !  +----------------------4z5t_A    
                 ! 
  ----KT--   L   +-------------------------7cvo_A

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updated Fri Sep 13 19:10:15 2024