interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE ROUS SARCOMA VIRUS INTASOME
(GAG-PRO-POL POLYPROTEIN)
referenceBanerjee et al. Nature 530 362 2016
sourceROUS SARCOMA VIRUS (STRAIN PRAGUE C) / ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
experimentX-ray (resolution=3.80, R-factor=0.256)
structural superfamilyRibonuclease H-like;DNA-binding domain of retroviral integrase;N-terminal Zn binding domain of HIV integrase;
sequence familyIntegrase core domain; Integrase DNA binding domain; Integrase Zinc binding domain;
multimeric complexes5ejk_ABG 5ejk_CE 7jn3_EF 7ku7_AB 7kui_EF
reference complex7jn3_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureAERRER

Estimated binding specificities ?

readout + contactlogo
# IC=4.434 IC/col=0.887 n_of_columns=5 specificity:   
A |  13  13   0   0   0
C |  16  13   0   0   0
G |  54  16   0  96   0
T |  13  54  96   0  96
scan!

home
updated Tue Dec 17 01:36:39 2024