5mlu_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
reference	Cherepanov et al. 'Proc. 114 5509 2017
experiment	X-ray (resolution=2.80, R-factor=0.209)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5mlu_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mlu_A interface=2,3,27, hRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera

  
  RG--RT----       +-----------------------------8grq_A    
                   !  
  RG--------       !                            +8jh2_e    
                   !         +------------------4 
  RGLCRT----     -10    +----7                  +8hr1_E    
                   !    !    ! 
  ------RA--       !    !    +-------------------6g0l_D    
                   !    ! 
  ----RA--RA       !    !                        +6a5l_g    
                   +----9         +--------------2 
  ----RG----            ! +-------6              +8txv_G    
                        ! !       ! 
  ----RG----            ! !       +--------------8jla_C    
                        +-8 
  ----RT----              !                      +8u14_G    
                          !       +--------------1 
  ----RG----              !       !              +5x0y_G    
                          +-------5 
  ----RA----                      !              +1zla_C    
                                  +--------------3 
  ----RG----                                     +8ox0_C

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updated Sun Aug 3 09:33:34 2025