5mlu_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
reference	Cherepanov et al. 'Proc. 114 5509 2017
experiment	X-ray (resolution=2.80, R-factor=0.209)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5mlu_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mlu_A interface=2,3,27, hRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera

  
  RGYA--LC----                                 +5mlu_A    
                                     +---------2 
  RT--RG------                       !         +6pww_K    
                                   +-6 
  RA----LT--RC                     ! !           +5xm1_A    
                                   ! !         +-1 
  RG--------RT                   +-7 +---------3 +8g57_E    
                                 ! !           ! 
  RA----LT----                   ! !           +4z5t_A    
                                 ! ! 
  RT--------RA               +---8 +-----------7ea8_A    
                             !   ! 
  RG--RC------               !   !     +-------6fq8_A    
                             !   +-----5 
  ----------RA       +-------9         !    +--7xsx_a    
                     !       !         +----4 
  ----------RC       !       !              +--6qld_f    
                   -10       ! 
  RG----------       !       +-----------------6y5d_Q    
                     !  
  --------KT--   L   +-------------------------7cvo_A

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updated Fri Sep 13 20:01:16 2024