5xm1_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3MM7, AND H4
reference	Kurumizaka et al. 'Nat 9 1400 2018
experiment	X-ray (resolution=3.45, R-factor=0.204)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5xm1_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xm1_A interface=2,3,28,46, pHRyrpgtvalreirryqkatellirkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  HTRA----LT--RC                                   +5xm1_A    
                                     +-------------1 
  --RT--RG------                     !             +6pww_K    
                                     ! 
  HTRG--------RT                     !              +8g57_E    
                         +-----------8      +-------2 
  --RT--------RA         !           !      !       +7ea8_A    
                         !           ! +----6 
  ------------RA         !           ! !    !    +--7xsx_a    
                         !           ! !    +----5 
  ------------RC         !           +-7         +--6qld_f    
                       +-9             ! 
  --RGYA--LC----       ! !             !           +5mlu_A    
                       ! !             +-----------4 
  --RG--RC------       ! !                         ! +6fq8_A    
                     -10 !                         +-3 
  --RG----------       ! !                           +6y5d_Q    
                       ! ! 
  ----------KT--   L   ! +-------------------------7cvo_A    
                       !  
  --RA----LT----       +--------------------------4z5t_A

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updated Fri Sep 13 20:54:36 2024