5xm1_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3MM7, AND H4
reference	Kurumizaka et al. 'Nat 9 1400 2018
experiment	X-ray (resolution=3.45, R-factor=0.204)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5xm1_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xm1_A interface=2,3,28,46, pHRyrpgtvalreirryqkatellirkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  RG--------                                    +8jh2_e    
                                +---------------3 
  RG--RT----             +------5               +8grq_A    
                         !      ! 
  RGLCRT----           +-7      +---------------8hr1_E    
                       ! ! 
  ------RA--         +-8 +----------------------6g0l_D    
                     ! ! 
  ----RG----       +-9 +------------------------8ox0_C    
                   ! ! 
  ----RG----       ! +-------------------------8jla_C    
                   !  
  ----RA----     -10            +--------------1zla_C    
                   !       +----4 
  ----RA--RA       !       !    !              +6a5l_g    
                   !       !    +--------------2 
  ----RG----       +-------6                   +8txv_G    
                           ! 
  ----RT----               !                   +8u14_G    
                           +-------------------1 
  ----RG----                                   +5x0y_G

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updated Sun Aug 3 10:28:05 2025