| structure name | CRYSTAL STRUCTURE OF CTCF ZFS4-8-ECBS (Transcriptional repressor CTCF) |
| reference | Wang et al. 'Cell 27 1365 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.33, R-factor=0.224) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| reference complex | 5k5i_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | ERRDYKRTQTRSD |
Estimated binding specificities ?
| readout + contact |  |
A | 5 0 2 5 7 96 0 90 11 0 24 0 5 C | 73 96 5 75 5 0 0 0 1 0 24 96 5 G | 7 0 84 11 5 0 96 6 84 96 24 0 86 T | 11 0 5 5 79 0 0 0 0 0 24 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatTTSC--EC--RGYGECSCKGRGDG--YCKGRG--TCQA----TC---- L +-----------------------------5t0u_A ! WT--AAHT--YA----QARAVTTT----NA------ECYTSGST--KG L ! +------6wmi_A ! +---1 --AG--KG--RG--RGDCKG------YC--------RGSTDCHG--RG L +-5 +------2 +------7eyi_G ! ! ! ! ------------------YG--WT--WTSTET----FTVASGDCSART L ! ! +----3 +----------6a57_A ! ! ! ! ----TTSGRTRG--LTECYC--NTYGQGFT------------------ L --6 +------4 +-----------------2lt7_A ! ! ----------------SA----TT----NAVTRT-------------- ! +----------------------7y3m_I ! ------------------------------------RG--SGDC---- L +-----------------------------5k5l_F |
home
updated Mon Dec 18 14:07:54 2023