5yuy_A : 3D-footprint complex

structure name	DNA POLYMERASE IV - DNA TERNARY COMPLEX 9 (DNA polymerase IV)
reference	Kottur et al. 'Nucleic 46 5875 2018
source	Escherichia coli K-12
experiment	X-ray (resolution=1.74, R-factor=0.190)
structural superfamily	DNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain;
sequence family	impB/mucB/samB family;
redundant complexes	4ir1_F 4ir9_F 4irc_F 4ird_F 4irk_A 4q43_F 4q45_A 5yuw_A 5yuz_A 5yv0_A 5yv1_F 5yv2_A 5yv3_F 5zlv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yuy_A interface=41,43,57,247,286,300, gsrkiihvdmdcffaavemrdnpalrdipiaiggsrerrgViStanyparkfgvrsAmptgmalklcphltllpgrfdaykeasnhireifsrytsrieplsldeayldvtdsvhchgsatliaqeirqtifnelqltasagvapvkflakiasdmnkpngqfvitpaevpaflqtlplakipgvgkvsaakleamglrtcgdvqkcdlvmllkrfgkfgrilwersqgiderdvnserlrksvgvErtmaedihhwseceaiierlypelerrlakvkpdlliaRqgvklkfddfqqtTqehvwprlnkadliatarktwderrggrgvrlvglhvtlldp

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?

matrix format

  
  --------VASA----AAPT--MT--------------------EG----RT----FT--RT----                                        +-5yuy_A    
                                                                                                            ! 
  ----VG--AG--------PCIAKAQA------------KC----YC----------LCST--RC--                                      +-4   +4f4y_B    
                                                                                                          ! ! +-1 
  --------AC----AG------------------------ST--YG----RG----LC----RCKT                                      ! +-2 +4f4z_A    
                                                                                                        +-5   ! 
  ----VG--AGAG------PC------MG----------------IC------HA--LCST--RGRG                                    ! !   +4f4w_A    
                                                                                                    +---6 ! 
  --------MASA----AAPC--IC--------------------EG------------TG----RG                                !   ! +-2oh2_B    
                                                                                                +---7   ! 
  --------EG--------FG------------------------ETYG------HG----------                            !   !   +---3gqc_A    
                                                                                              +-8   ! 
  FCYC--------TTAT------------SCICDCEC----ST----------------SG--RCRT                          ! !   +-------4tqr_A    
                                                                                      +-------9 ! 
  --------MA--------PAFAIA--------------------EC----------FTTG------                  !       ! +-----------7nv0_A    
                                                                                 +---10       ! 
  ------QT--IT------------------------------ST----TA--------RC------             !    !       +-------------7m7n_A    
                                                                                 !    !  
  --YG----------------------------------------EG------RA------------          +-11    +---------------------3osn_A    
                                                                              !  !  
  ------------------------------------RT----------------------------          !  !                         +3n4m_B    
                                                                           +-12  +-------------------------3 
  ------------------------------------RA----------------------------       !  !                            +6b6h_I    
                                                                         -13  !  
  ------------------------------------RG----------------------------       !  +---------------------------5tw1_T    
                                                                           !  
  ------------------------------------RT----------------------------       +-----------------------------5vi8_T

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updated Fri Sep 13 21:03:23 2024