interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
(HISTONE H2A TYPE 1-BE)
referenceTachiwana et al. 'Nat 10 576 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.73, R-factor=0.205)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes5z23_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----           +-----------------------------8ox0_C    
                   +-7 
  --RG----       +-8 +-----------------------------5x0y_G    
                 ! ! 
  --RG----       ! +-----------------------------8jla_C    
                 ! 
  --RT----       !                             +8u14_G    
                 !                     +-------1 
  --RA----       !                     !       +1zla_C    
               --9                 +---3 
  --RG----       !                 !   !       +8txv_G    
                 !          +------4   +-------2 
  --RA--RA       !          !      !           +6a5l_g    
                 !        +-5      ! 
  ----RA--       !        ! !      +-----------6g0l_D    
                 +--------6 ! 
  LCRT----                ! +------------------8hr1_E    
                          ! 
  --RT----                +--------------------8grq_A    
               

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updated Sun Aug 3 10:39:12 2025