interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
(HISTONE H2A TYPE 1-BE)
referenceTachiwana et al. 'Nat 10 576 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.73, R-factor=0.205)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes5z23_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RA                                               +6t7a_C    
                             +-----------------------------1 
  --------RT               +-2                             +7lyb_G    
                           ! ! 
  KA------RT             +-3 +-----------------------------1u35_G    
                         ! ! 
  --RAETRT--           +-4 +-----------------------------4ne1_p    
                       ! ! 
  --------RT         +-5 +-----------------------------7wlr_E    
                     ! ! 
  --------RT       +-6 +-----------------------------7zs9_e    
                   ! ! 
  --------RT     --7 +-----------------------------7lya_E    
                   ! 
  ----IT--RA       +-----------------------------7k78_E    
                 

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updated Fri Sep 13 21:05:53 2024