6dbq_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS AND 23-RSS SUBSTRATE DNAS (RECOMBINATION ACTIVATING GENE 1 - MBP CHIMERA)
reference	Liao et al. 'Nat. 25 732 2018
source	ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.22, R-factor=0.424)
multimeric complexes	6dbo_CD 6dbr_ACD 6dbt_AD 6dbt_BC 6dbu_AD 6dbv_AD 6dbv_BC 6dbw_ABC 6dbx_ABC
reference complex	6dbj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbq_A interface=3,14,17,18,94,113,116,222,592,593, ggRprqhllsltrRaqKHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyHkmyrtvkatsgrqifqplHtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekHgsgpavpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRQsktfeledilkhhwlytskylqkfmeah
interface signature	RRKHHHRHRQ

Estimated binding specificities ?

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# IC=11.809 IC/col=0.337 n_of_columns=35

specificity:

A |   0  24  14  24  24  24  11  92  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  90   0  90  87  90  96  90
C |  96  24  11  24  24  24   8   2  24   8  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   2  96   0   2   2   0   2
G |   0  24  61  24  24  24  11   2  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   2   5   2   0   2
T |   0  24  10  24  24  24  66   0  24  78  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   0   4   2   2   0   2

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updated Fri Jan 9 05:48:42 2026