6dbq_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS AND 23-RSS SUBSTRATE DNAS (RECOMBINATION ACTIVATING GENE 1 - MBP CHIMERA)
reference	Liao et al. 'Nat. 25 732 2018
source	ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.22, R-factor=0.424)
multimeric complexes	6dbo_CD 6dbr_ACD 6dbt_AD 6dbt_BC 6dbu_AD 6dbv_AD 6dbv_BC 6dbw_ABC 6dbx_ABC
reference complex	6dbj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbq_A interface=3,14,17,18,94,113,116,222,592,593, ggRprqhllsltrRaqKHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyHkmyrtvkatsgrqifqplHtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekHgsgpavpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRQsktfeledilkhhwlytskylqkfmeah
interface signature	RRKHHHRHRQ

Estimated binding specificities ?

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# IC=11.483 IC/col=0.328 n_of_columns=35

specificity:

A |   0  24   7  24  24  24  12  89  24   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  89   0  90  86  92  96  86
C |  90  24  12  24  24  24   7   0  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   1  96   3   4   0   0   3
G |   3  24  68  24  24  24  12   3  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   0   3   3   1   0   4
T |   3  24   9  24  24  24  65   4  24  80  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   0   0   3   3   0   3

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updated Thu Sep 12 23:02:28 2024