6dbq_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS AND 23-RSS SUBSTRATE DNAS (RECOMBINATION ACTIVATING GENE 1 - MBP CHIMERA)
reference	Liao et al. 'Nat. 25 732 2018
source	ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.22, R-factor=0.424)
multimeric complexes	6dbo_CD 6dbr_ACD 6dbt_AD 6dbt_BC 6dbu_AD 6dbv_AD 6dbv_BC 6dbw_ABC 6dbx_ABC
reference complex	6dbj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbq_A interface=3,14,17,18,94,113,116,222,592,593, ggRprqhllsltrRaqKHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyHkmyrtvkatsgrqifqplHtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekHgsgpavpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRQsktfeledilkhhwlytskylqkfmeah
interface signature	RRKHHHRHRQ

Estimated binding specificities ?

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# IC=12.040 IC/col=0.344 n_of_columns=35

specificity:

A |   0   0   2   2   2   0   2  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  89  24   4  70  24  24  24  11  24   5
C |   2   0   5   2   2   0   2  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   2  24   2   8  24  24  24  73  24   2
G |   4   0   2   5   0  96   2  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  24   0   5  24  24  24   7  24  87
T |  90  96  87  87  92   0  90  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5  24  90  13  24  24  24   5  24   2

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updated Sun Jun 28 15:16:57 2026