6j5b_C : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR THE TARGET DNA RECOGNITION AND BINDING BY THE MYB DOMAIN OF PHOSPHATE STARVATION RESPONSE REGULATOR 1 (Protein PHOSPHATE STARVATION RESPONSE 1)
reference	Isupov et al. 'Febs 286 2809 2019
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.70, R-factor=0.220)
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
multimeric complexes	6j4r_AD 6j4r_BC 6j5b_AD 6j5b_CF 6j5b_HJ
redundant complexes	6j4r_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j5b_C interface=4,48,49,52, gkaRmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvKShlQkyrtary
interface signature	RKSQ

Estimated binding specificities ?

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# IC=6.269 IC/col=0.896 n_of_columns=7

specificity:

A |   0   0  96   9  75   6  75
C |   7   0   0   6   9   6   9
G |  89   0   0   6   6   6   6
T |   0  96   0  75   6  78   6

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT--NT--NAIARG   L   +-----------------------------1b72_B    
                     --3 
  RA--IAQTNA----   L   !            +----------------5ego_B    
                       +------------2 
  RT--VTQTNA--RG   L                !            +---8ejp_B    
                                    +------------1 
  --RTNT--NAIARG   L                             +---4cyc_B

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updated Mon Jun 29 23:25:14 2026