interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH DNA
(CADR)
referenceLiu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
sourcePSEUDOMONAS PUTIDA
experimentX-ray (resolution=2.80, R-factor=0.207)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR, DNA binding; MerR family regulatory protein;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureERYRY

Estimated binding specificities ?

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# IC=3.627 IC/col=0.403 n_of_columns=9 specificity:   
A |  73   0  24  73  24  75  24  24   7
C |   7  96  24   9  24   7  24  24   9
G |   9   0  24   7  24   7  24  24  73
T |   7   0  24   7  24   7  24  24   7
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updated Tue Dec 17 04:35:32 2024