interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCENP-A NUCLEOSOME BOUND BY TWO COPIES OF CENP-C(CD) AND TWO COPIES CENP-N(NT)
(HISTONE H3-LIKE CENTROMERIC PROTEIN A)
sourceHOMO SAPIENS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6muo_ABCDEFGHM 6mup_ABCDEFGHMN
redundant complexes6muo
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RGYA--------RT                                  +7wlr_E    
                                   +--------------1 
  RG------------       +-----------5              +6a5l_e    
                       !           ! 
  RG----------RT       !           +--------------7zs9_e    
                       ! 
  --------IT--RA       !                          +7k78_E    
                       !           +--------------3 
  RG----------RT     --9      +----6              +7lya_E    
                       !      !    ! 
  RG--RA--------       !      !    +---------------7nky_e    
                       ! +----7 
  ------------RT       ! !    !                    +1u35_G    
                       ! !    !     +--------------2 
  ------------RT       +-8    +-----4              +7lyb_G    
                         !          ! 
  ------------RA         !          +--------------6t7a_C    
                         ! 
  ------RAETRT--         +-------------------------4ne1_p    
                     

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updated Fri Sep 13 22:38:20 2024