Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameYEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7ea5_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--LC--                               +---------8bvw_e    
                                 +---------4 
  --------RT                  +--7         +---------7lyb_G    
                              !  ! 
  --RT--LARG             +----9  +-------------------7unc_a    
                         !    ! 
  --RG------             !    +----------------------6a5l_e    
                         !  
  --RA--LTRC             !                                +6jm9_A    
                         !           +--------------------1 
  HTRG----RT             !           !                    +8g57_E    
                         !           ! 
  --RGYALCRT             !        +--8     +--------------8byq_e    
                      +-13        !  ! +---5 
  --RT----RG          !  !        !  ! !   !       +------7uv9_E    
                      !  !        !  ! !   +-------3 
  --------RA          !  !        !  +-6           !   +--7xsx_a    
                      !  !     +-10    !           +---2 
  --------RC          !  !     !  !    !               +--6qld_f    
                      !  !     !  !    ! 
  ------LT--       +-14  !  +-11  !    +------------------7ywx_E    
                   !  !  !  !  !  !  
  --RG----RG       !  !  !  !  !  +-----------------------7yqk_E    
                   !  !  +-12  !  
  --RG----RT       !  !     !  +-----------------------8cww_A    
                 -15  !     !  
  HARA--LTRC       !  !     +--------------------------3kwq_E    
                   !  !  
  --RA------       !  +-----------------------------6kxv_A    
                   !  
  --------RA       +-----------------------------1kx5_G    
                 

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updated Sat Sep 14 02:20:35 2024