7lbw_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) BRIDGING TWO NON-SEQUENCE SPECIFIC DNA SUBSTRATES (Transcription factor A, mitochondrial)
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.84, R-factor=0.200)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
multimeric complexes	6erp_ACF 6erp_BGJ 6erq_ACF 6erq_BGJ 7lbw_AB
reference complex	7lbx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbw_B interface=12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSLTTIMKRYNVFPQL

Estimated binding specificities ?

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# IC=13.285 IC/col=0.474 n_of_columns=28

specificity:

A |   0   0   0   0  24   8   4  24  24  24  24  24  24  24  24  24  24  24  24   4  24  67  24   0  96   0   0  13
C |  96  96   0   0  24  62   6  24  24  24  24  24  24  24  24  24  24  24  24  82  24   8  24   0   0   0  96  14
G |   0   0   0   0  24  13   4  24  24  24  24  24  24  24  24  24  24  24  24   6  24  13  24  96   0  96   0  13
T |   0   0  96  96  24  13  82  24  24  24  24  24  24  24  24  24  24  24  24   4  24   8  24   0   0   0   0  56

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updated Fri Sep 13 04:34:46 2024