3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
(HISTONE DOUBLET DELTA-GAMMA DELTA)
sourceMARSEILLEVIRUS MARSEILLEVIRUS
experimentNMR
structural superfamilyHistone-fold;
multimeric complexes7lv8_ABCDEFGH 7lv9_ABCDEF
redundant complexes7lv8
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--           +-----------------------------6g0l_D    
                   +-7 
  --RG----         ! +-----------------------------5x0y_G    
                 +-8 
  --RA--RA       ! !                             +6a5l_g    
                 ! +-----------------------------2 
  --RG----       !                               +8txv_G    
                 ! 
  --RT----       !                               +8u14_G    
               --9                             +-1 
  --RA----       !                  +----------3 +1zla_C    
                 !                  !          ! 
  --RG----       !        +---------4          +8ox0_C    
                 !        !         ! 
  --RG----       !   +----5         +----------8jla_C    
                 !   !    ! 
  LCRT----       +---6    +--------------------8hr1_E    
                     ! 
  --RT----           +-------------------------8grq_A

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updated Sun Aug 3 16:59:23 2025