3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
(HISTONE DOUBLET DELTA-GAMMA DELTA)
sourceMARSEILLEVIRUS MARSEILLEVIRUS
experimentNMR
structural superfamilyHistone-fold;
multimeric complexes7lv8_ABCDEFGH 7lv9_ABCDEF
redundant complexes7lv8
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  RT------               +-----------------------------7v9c_H    
                         ! 
  ------RT               !                             +1u35_G    
                       +-4              +--------------1 
  ------RT             ! !      +-------2              +7lyb_G    
                       ! !      !       ! 
  ------RA           +-5 +------3       +--------------6t7a_C    
                     ! !        ! 
  ------RT           ! !        +----------------------7wlr_E    
                   +-6 ! 
  --RAET--         ! ! +-----------------------------4ne1_p    
                 +-7 ! 
  ------RT       ! ! +-----------------------------7lya_E    
               --8 ! 
  ------RT       ! +-----------------------------7zs9_e    
                 ! 
  ----ITRA       +-----------------------------7k78_E

home
updated Sat Sep 14 03:06:32 2024