3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
(HISTONE DOUBLET DELTA-GAMMA DELTA)
sourceMARSEILLEVIRUS MARSEILLEVIRUS
experimentNMR
structural superfamilyHistone-fold;
multimeric complexes7lv8_ABCDEFGH 7lv9_ABCDEF
redundant complexes7lv8
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--             +-----------------------------6g0l_D    
                     +-6 
  --RA--RA         +-7 +-----------------------------6a5l_g    
                   ! ! 
  --RG----         ! +-----------------------------8ox0_C    
                   ! 
  --RT----         !                             +8u14_G    
                   !              +--------------1 
  --RG----       +-8              !              +5x0y_G    
                 ! !        +-----3 
  --RA----       ! !        !     !             +1zla_C    
                 ! !   +----4     +-------------2 
  --RG----       ! !   !    !                   +8jla_C    
               --9 +---5    ! 
  LCRT----       !     !    +--------------------8hr1_E    
                 !     ! 
  --RT----       !     +-------------------------8grq_A    
                 ! 
  --RG----       +-----------------------------8txv_G

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updated Wed Dec 18 09:39:15 2024