interface graph thumbnail
legend  pdf

structure nameBRXR FROM ACINETOBACTER BREX TYPE I PHAGE RESTRICTION SYSTEM BOUND TO DNA
(BRXR)
referenceStoddard et al. 'Nucleic 50 5171 2022
sourceACINETOBACTER SP. NEB 394
experimentX-ray (resolution=2.30, R-factor=0.198)
multimeric complexes7t8k_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRQQSHK

Estimated binding specificities ?

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# IC=6.188 IC/col=0.773 n_of_columns=8 specificity:   
A |   5   5  96   0   5  24   5  81
C |   5   5   0  96   5  24   7   5
G |   7  11   0   0   7  24   5   5
T |  79  75   0   0  79  24  79   5
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----------STRGQTQAST------------HG------KT----------   L                                +-7t8k_B    
                                                                           +--------------2 
  ------SGQG--YCNC------------------------------------                +----3              +-2ve9_C    
                                                                      !    ! 
  --RGKG------------------------------YGKC------------   L         +--5    +----------------6lui_A    
                                                                   !  ! 
  --------------------NT--NA----RG--------------------   L         !  +---------------------1b8i_B    
                                                                 +-6 
  ----------------------YG----------------------------           ! !                      +-2heo_D    
                                                                 ! !      +---------------1 
  --------------TTHT--KG------------RC----------------   L     +-7 +------4               +-7b0c_A    
                                                               ! !        ! 
  MG--------TGQAAT--SA------RG------------------------   L     ! !        +-----------------2p5l_D    
                                                             +-8 ! 
  ------------------------------------------RAYACAPAWA       ! ! +--------------------------3jca_H    
                                                           --9 ! 
  --------------------NCITNA--RGRG--------------------   L   ! +---------------------------6fqq_E    
                                                             ! 
  --------------------IAKGNA--------------------------   L   +---------------------------2hdd_A    
                                                           

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updated Sat Sep 14 04:38:47 2024