interface graph thumbnail
legend  pdf

structure nameCOSR DNA BOUND FORM II
(DNA-binding response regulator)
referenceMbio 15 e0343023 2024 X-RAY DIFFRACTION
sourceCampylobacter jejuni
experimentX-ray (resolution=2.21, R-factor=0.254)
structural superfamilyCheY-like;
sequence familyTranscriptional regulatory protein, C te; Response regulator receiver domain;
multimeric complexes8uvk_AB 8uvx_AB
redundant complexes8uvx_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVEVNR

Estimated binding specificities ?

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# IC=5.587 IC/col=0.698 n_of_columns=8 specificity:   
A |  59   9  24  24  20   0   0  96
C |   9  11  24  24  67   0   0   0
G |  19   0  24  24   9   0   0   0
T |   9  76  24  24   0  96  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --RG--DTVTSTRG------WT----   L         +-----------------------------6lxn_A    
                                       +-1 
  ----------YG--------------         +-2 +-----------------------------3eyi_B    
                                     ! ! 
  TTKATTQTTG----LTRTKA--FTYT   L   +-3 +-----------------------------2p7c_B    
                                   ! ! 
  --RG--DTVTST--RG----RC----   L --4 +-----------------------------4nhj_A    
                                   ! 
  --------VTKGNAKA----------   L   +-----------------------------2lkx_A    
                                 

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updated Sat Sep 14 12:21:29 2024