| structure name | HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE (PAIRED PROTEIN) |
| reference | Wilson et al. 'Cell(Cambridge,Mass.)' 82 709 1995 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.00, R-factor=0.198) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes |  1pdn_C
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRVQN |
Estimated binding specificities ?
| readout + contact |  |
A | 9 0 96 96 9 24 67 C | 9 0 0 0 9 24 11 G | 69 0 0 0 9 24 9 T | 9 96 0 0 69 24 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PAIRED | ||
| GTTAT | PubMed | 1fjl_B(6.06e-03) |
| TAATT | PubMed | 1fjl_B(1.01e-03) |
| TAATGTTATTA | PubMed | 1fjl_B(1.06e-03) |
Dendrogram of similar interfaces ?
matrix format--RART----VTKGNA--KA L +2lkx_A +-1 RA--RA----IAQTNA---- L +------------------3 +5ego_B ! ! ----RT----NT--NAIARG L ! +1b72_B +------7 ----RT----IAQCNAMG-- L ! ! +----1b72_A ! ! +-------5 ----RC----IAQCNAYC-- L ! ! ! +----3rkq_B ! +------6 ----RT--QTVAQTNA---- L --8 ! +--8osb_E ! +---------4 ----------NCICNARGRG L ! ! +4xrm_B ! +--2 ------RT--NT--NAIARG L ! +4cyc_B ! ----------VTCCNAQA-- L +--------------------------8g87_X |
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updated Sat Jan 10 04:36:39 2026