6lui_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX (ATHERIN)
reference	Zhou et al. 'Sci 7 ? 2021
source	HOMO SAPIENS
experiment	X-ray (resolution=1.78, R-factor=0.204)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lui_A interface=16,18,19,60,61, sphyqewildtidslRsRKarpdlericrmvrrrhgpepertraelekliqqravlrvsYKgsisyrnaar
interface signature	RRKYK

Estimated binding specificities ?

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# IC=6.404 IC/col=0.915 n_of_columns=7

specificity:

A |   7   7   0   0   0  51   0
C |   0   0  96   8  96   9  96
G |   8  81   0  66   0  14   0
T |  81   8   0  22   0  22   0

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Dendrogram of similar interfaces ?

matrix format

  
  TT----KATTQTTG----LTRT----KAFTYT   L           +-----------------------------2p7c_B    
                                               +-2 
  ----------NAST--RTHT--ST--------   L         ! +-----------------------------3l2c_A    
                                             +-3 
  ----------NAST--RGHT--STLT------   L       ! !              +--------------7cby_C    
                                           +-4 +--------------1 
  ------QCKT--RGAT--RGNT----------   L     ! !                +--------------8smh_F    
                                         +-5 ! 
  ------------------YG------------       ! ! +-----------------------------3eyi_B    
                                       --6 ! 
  --ITRGECSCSGKG------------------   L   ! +-----------------------------5i2d_R    
                                         ! 
  --------SA----------------------       +-----------------------------2xcr_U

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updated Wed Dec 18 04:36:39 2024