interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
(ATHERIN)
referenceZhou et al. 'Sci 7 ? 2021
sourceHOMO SAPIENS
experimentX-ray (resolution=1.78, R-factor=0.204)
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRKYK

Estimated binding specificities ?

readout + contactlogo
# IC=6.433 IC/col=0.919 n_of_columns=7 specificity:   
A |   0   7   0   0   0  51   0
C |   7   7  96   7  96   7  96
G |   1  75   0  66   0  16   0
T |  88   7   0  23   0  22   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  TT----KATTQTTG----LTRT----KAFTYT   L         +-----------------------------2p7c_B    
                                               ! 
  ----------NAST--RTHT--ST--------   L       +-3                         +---3l2c_A    
                                             ! !       +-----------------1 
  ----------NAST--RGHT--STLT------   L       ! +-------2                 +---7cby_C    
                                           +-4         ! 
  ------QCKT--RGAT--RGNT----------   L     ! !         +---------------------8smh_F    
                                         +-5 ! 
  ------------------YG------------       ! ! +-----------------------------3eyi_B    
                                       --6 ! 
  --ITRGECSCSGKG------------------   L   ! +-----------------------------5i2d_R    
                                         ! 
  --------SA----------------------       +-----------------------------2xcr_U    
                                       

home
updated Fri Sep 13 22:34:49 2024