6lui_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX (ATHERIN)
reference	Zhou et al. 'Sci 7 ? 2021
source	HOMO SAPIENS
experiment	X-ray (resolution=1.78, R-factor=0.204)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lui_A interface=16,18,19,60,61, sphyqewildtidslRsRKarpdlericrmvrrrhgpepertraelekliqqravlrvsYKgsisyrnaar
interface signature	RRKYK

Estimated binding specificities ?

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# IC=5.938 IC/col=0.848 n_of_columns=7

specificity:

A |   0  16   0  20   0   5  80
C |   0   5   0  71   6  66   5
G |  96  20  96   5  90   5   6
T |   0  55   0   0   0  20   5

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KGQG--------------------           +-----------------------------8h7a_A    
                                   +-1 
  ----DT--RTRGTT------KT--   L   +-2 +-----------------------------2o8k_A    
                                 ! ! 
  ------ITRGECSCSGKG------   L --3 +-----------------------------5i2d_R    
                                 ! 
  ----------DCKT--RGSTRGYC   L   +-----------------------------4uno_A

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updated Tue Dec 19 13:42:39 2023