| structure name | GENERAL STRUCTURE-BASED APPROACH TO THE DESIGN OF PROTEIN LIGANDS: APPLICATION TO THE DESIGN OF KV1.2 POTASSIUM CHANNEL BLOCKERS. (Z-DNA binding protein 1) |
| reference | Charbonnier et al. J.Am.Chem.Soc. 128 16190 2006 |
| source | Mus musculus |
| experiment | X-ray (resolution=1.70, R-factor=0.248) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format------------------------------YG---------- +2heo_D +--------------1 ----------------NT--TCTA--------------RT-- L +-----4 +5zux_A ! ! ------LT------RTSGTG--QTRG---------------- L +-5 +--------------2xro_E ! ! --------SGQG--YCNC------------------------ +-6 +--------------------2ve9_C ! ! --------------RCTT----TTHT--LA------------ L +-7 +----------------------7e1b_B ! ! ------------DCLT--AG--TTRG------RG------RA L +-8 +------------------------5h3r_A ! ! ----------------TTHT----KG--------RC------ L +-9 +-------------------------7b0c_A ! ! RGRTKG----------------------------YG------ L +-10 +-------------------------6lui_A ! ! --------------RC------RC------------------ +-11 +--------------------------6wfq_C ! ! --------TC--STKTPTTT--FT--------------RT-- +-12 +--------------------------4ass_H ! ! --------------MGSGTT--TTYC---------------- L +-13 +---------------------------5f7q_C ! ! ----------------NTVC--ECSTYT--STYC--RA---- L +-14 +---------------------------5ed4_A ! ! ------------------RG--YC------------------ L +-15 +---------------------------1cf7_B ! ! ------------------SA---------------------- +-16 +---------------------------3l4j_A ! ! ------------SGRCRGTG--DCRG---------------- L ! +----------------------------3w6v_A +-17 --------------------SA-------------------- L ! ! +5npk_d ! ! +-----2 --------------------SA-------------------- -18 +---------------------3 +2xcr_U ! ! ----------------QAAG---------------------- L ! +------5zen_A ! ----------------SCTA--KTVCHT--KG---------- L +----------------------------1je8_F |
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updated Tue Dec 17 22:47:52 2024