interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS
(HISTONE H3)
referenceWhite et al. 'EMBO 20 5207 2001
sourceSACCHAROMYCES CEREVISIAE
experimentX-ray (resolution=3.10, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1id3_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--RT----       +-----------------------------8grq_A    
                   !  
  RG--------       !                            +8jh2_e    
                   !      +---------------------3 
  RGLCRT----       !      !                     +8hr1_E    
                   !      ! 
  ----RA----       !      !                   +--7xsx_a    
                 -11      !     +-------------4 
  ------RA--       !  +---9     !             +--6g0l_D    
                   !  !   ! +---7 
  ----RA----       !  !   ! !   !                 +1zla_C    
                   !  !   ! !   ! +---------------2 
  ----RG----       !  !   ! !   +-6               +8ox0_C    
                   !  !   ! !     ! 
  ----RG----       !  !   +-8     +---------------8jla_C    
                   +-10     ! 
  ----RA--RA          !     !                    +6a5l_g    
                      !     !     +--------------1 
  ----RG----          !     +-----5              +8txv_G    
                      !           ! 
  ----RG----          !           +--------------5x0y_G    
                      !  
  ----RT----          +--------------------------8u14_G    
                 

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updated Sun Aug 3 05:35:42 2025