| structure name | INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA (PROTEIN INTERFERON REGULATORY FACTOR 1) |
| reference | Escalante et al. |
| source | Mus musculus |
| experiment | X-ray (resolution=3.00, R-factor=0.242) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Interferon regulatory factor transcription f; |
| multimeric complexes | 1if1_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HNRCNS |
Estimated binding specificities ?
readout + contact |  |
A | 0 0 45 83 54 4 C | 0 0 12 4 20 4 G | 0 96 16 4 18 84 T | 96 0 23 5 4 4scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: IRF-1 | ||
| GAAANN | PubMed | 1if1_B(1.18e-03) |
| GAAAGT | PubMed | 1if1_B(9.73e-07), 1if1_AB(1.42e-03) |
| GTAAAGAAAGT | PubMed | 1if1_B(1.18e-04) |
| AAAGGA | PubMed | 1if1_B(1.20e-03) |
| GAAAG | PubMed | 1if1_B(1.34e-07) |
Dendrogram of similar interfaces ?
matrix format----NASTRGHT--ST-- L +-----------------------------2uzk_A +-3 ----NASTRTHT--ST-- L ! +-----------------------------3l2c_A --4 --KTRG----RGYA---- L ! +-4l18_B ! +---1 --KTRG----RGYT---- L +-----------------------2 +-4bqa_A ! ECKTRGAT--RGHT--RA L +-----4mhg_A |
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updated Fri Sep 13 15:40:33 2024