| structure name | MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE (Homeotic protein Msx-1) |
| reference | Abate-Shen et al. Biochemistry 40 12013 2001 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.20, R-factor=0.205) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRKIQNR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 24 54 0 0 96 13 C | 96 24 13 0 0 0 13 G | 0 24 16 0 0 0 54 T | 0 24 13 96 96 0 16scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MSX-1 | ||
| TTAATTG | PubMed | 1ig7_A(5.68e-05) |
| TGTCACTAATTGAAGG | PubMed | 1ig7_A(1.61e-05) |
| ACTAATTGG | PubMed | 1ig7_A(5.86e-07) |
| ACTAATTG | PubMed | 1ig7_A(1.65e-07) |
| TAATTG | PubMed | 1ig7_A(6.99e-06) |
Dendrogram of similar interfaces ?
matrix formatRART----VTKGNA--KA-- L +-------------------2lkx_A ! --RT----IAQCNAMG---- L +-----6 +----1b72_A ! ! +--4 --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! +-----------5 --RT--QTVAQTNA------ L ! ! +--8osb_E ! ! ! --------NCRG-------- L +-7 +----3 +4xrm_B ! ! ! +-1 --------NCITNARGRG-- L ! ! +--2 +6fqq_E ! ! ! ----RT--NT--NAIARG-- L --8 ! +4cyc_B ! ! --------VTCCNAQA--RT L ! +-------------------------8g87_X ! --------------YCFAKC L +--------------------------6pe2_B |
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updated Mon Jun 29 14:16:45 2026