| structure name | MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE (Homeotic protein Msx-1) |
| reference | Abate-Shen et al. Biochemistry 40 12013 2001 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.20, R-factor=0.205) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRKIQNR |
Estimated binding specificities ?
| readout + contact |  |
A | 10 0 74 96 10 24 0 C | 64 0 10 0 12 24 0 G | 10 0 2 0 10 24 96 T | 12 96 10 0 64 24 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MSX-1 | ||
| TTAATTG | PubMed | 1ig7_A(5.68e-05) |
| TGTCACTAATTGAAGG | PubMed | 1ig7_A(1.61e-05) |
| ACTAATTGG | PubMed | 1ig7_A(5.86e-07) |
| ACTAATTG | PubMed | 1ig7_A(1.65e-07) |
| TAATTG | PubMed | 1ig7_A(6.99e-06) |
Dendrogram of similar interfaces ?
matrix formatRART----VTKGNA--KA-- L +2lkx_A +-1 --RA----IAQTNA------ L +-------------------------3 +5ego_B ! ! --RT----NT--NAIARG-- L ! +-1b72_B ! --RT--QTVAQTNA------ L ! +-8osb_E ! +-2 --RT----IAQCNAMG---- L ! +---------4 +-1b72_A --9 ! ! --------NCRG-------- L ! +-----------6 +---4xrm_B ! ! ! --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! +-7 +--------5 ----RT--NT--NAIARG-- L ! ! ! +----4cyc_B +-8 ! --------VTCCNAQA--RT L ! +-------------------------8g87_X ! --------------YCFAKC L +--------------------------6pe2_B |
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updated Sat Jan 10 04:40:33 2026