| structure name | CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA (34L protein) |
| reference | Lowenhaupt et al. Proc.Natl.Acad.Sci.USA 101 14367 2004 |
| source | Yaba-like disease virus |
| experiment | X-ray (resolution=2.00, R-factor=?) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Adenosine deaminase zalpha domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format------------------TTHT--KG----------------RC---- L +-----------------------------7b0c_A +-2 --------LT------RTSGTGQTRG---------------------- L +-3 +-----------------------------2xro_E ! ! ----------TC--STKTPTTTFT----------------------RT +-4 +-----------------------------4ass_H ! ! --------------------QTST--RGHTNT--STLA---------- L +-5 +-----------------------------2hdc_A ! ! ----------------------------------------------RT +-6 +-----------------------------3gfi_A ! ! --KC------------MGSGTTTTYC---------------------- L +-7 +-----------------------------5f7q_C ! ! ----------------RC----RC------------------------ +-8 +-----------------------------6wfq_C ! ! ----------------RCTT--TTHT--LA------------------ L +-9 +-----------------------------7e1b_B ! ! ----RGKG---------------------------------------- L +-10 +-----------------------------6lui_A ! ! ----------SGQG--YCNC---------------------------- +-11 +-----------------------------2ve9_C ! ! ----------------------NAST--RGHT----ST---------- L +-12 +-----------------------------3g73_A ! ! ------------------------------YG---------------- ! ! +2heo_D +-13 +-----------------------------1 ------------------NT--TA--------------------RT-- L ! ! +5zux_A +-14 ! RC---------------------------------------------- L ! ! +-----------------------------4roc_A +-15 ! ----------YC--KTHGSTQTYTPT---------------------- L ! ! +-----------------------------5x11_A -16 ! ------------------------NT------NA------RG------ L ! +-----------------------------1b8i_B ! ------------------------NC----ITNA----RGRG------ L +-----------------------------6fqq_E |
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updated Fri Sep 13 16:00:08 2024